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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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658 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SDHAF1
ENSSSCG00000024907
ENSG00000205138
Succinate dehydrogenase complex assembly factor 1
Low tissue specificity
Detected in all
SERAC1
ENSSSCG00000012314
ENSG00000122335
Serine active site containing 1
Low tissue specificity
Detected in all
SERPINC1
ENSSSCG00000015493
ENSG00000117601
Antithrombin-III precursor
Tissue enriched
Detected in some
liver:
265.5
SFXN4
ENSSSCG00000010681
ENSG00000183605
Sideroflexin 4
Low tissue specificity
Detected in all
SGSH
ENSSSCG00000017152
ENSG00000181523
N-sulfoglucosamine sulfohydrolase
Low tissue specificity
Detected in all
SI
ENSSSCG00000011735
ENSG00000090402
Sucrase-isomaltase
Tissue enriched
Detected in some
small intestine:
104.8
SLC16A1
ENSSSCG00000006771
ENSG00000155380
Monocarboxylate transporter 1
Tissue enhanced
Detected in many
large intestine:
76.4
SLC17A5
ENSSSCG00000004486
ENSG00000119899
Solute carrier family 17 member 5
Low tissue specificity
Detected in all
SLC19A3
ENSSSCG00000021968
ENSG00000135917
Solute carrier family 19 member 3
Tissue enhanced
Detected in many
kidney:
28.0
small intestine:
15.2
SLC1A1
ENSSSCG00000005222
ENSG00000106688
Excitatory amino acid transporter 3
Tissue enhanced
Detected in many
brain:
18.7
kidney:
15.9
small intestine:
30.8
SLC24A5
ENSSSCG00000004662
ENSG00000188467
Solute carrier family 24 member 5
Tissue enhanced
Detected in many
choroid plexus:
18.2
SLC25A1
ENSSSCG00000010116
ENSG00000100075
Tricarboxylate transport protein, mitochondrial
Low tissue specificity
Detected in all
SLC25A12
ENSSSCG00000015949
ENSG00000115840
Solute carrier family 25 member 12
Tissue enhanced
Detected in all
skeletal muscle:
57.1
SLC25A13
ENSSSCG00000015336
ENSG00000004864
Solute carrier family 25 member 13
Low tissue specificity
Detected in all
SLC25A15
ENSSSCG00000009373
ENSG00000102743
Mitochondrial ornithine transporter 1
Group enriched
Detected in all
kidney:
35.2
liver:
78.2
SLC25A20
ENSSSCG00000011366
ENSG00000178537
Solute carrier family 25 member 20
Low tissue specificity
Detected in all
SLC25A26
ENSSSCG00000011498
ENSG00000144741
Solute carrier family 25 member 26
Tissue enhanced
Detected in all
male glands:
38.8
SLC25A3
ENSSSCG00000000886
ENSG00000075415
Phosphate carrier protein, mitochondrial
Low tissue specificity
Detected in all
SLC25A4
ENSSSCG00000015790
ENSG00000151729
Solute carrier family 25 member 4
Group enriched
Detected in all
heart:
222.5
skeletal muscle:
196.1
SLC2A2
ENSSSCG00000020927
ENSG00000163581
Solute carrier family 2, facilitated glucose transporter member 2
Tissue enriched
Detected in many
liver:
70.9
SLC34A1
ENSSSCG00000037535
ENSG00000131183
Sodium-dependent phosphate transport protein 2A
Tissue enriched
Detected in single
kidney:
193.9
SLC34A3
ENSSSCG00000040105
ENSG00000198569
Solute carrier family 34 member 3
Tissue enriched
Detected in many
kidney:
76.1
SLC35A1
ENSSSCG00000004304
ENSG00000164414
Solute carrier family 35 member A1
Low tissue specificity
Detected in all
SLC35A2
ENSSSCG00000024841
ENSG00000102100
Solute carrier family 35 member A2
Low tissue specificity
Detected in all
SLC35C1
ENSSSCG00000025647
ENSG00000181830
GDP-fucose transporter 1
Tissue enhanced
Detected in all
male glands:
33.3
SLC36A2
ENSSSCG00000017086
ENSG00000186335
Solute carrier family 36 member 2
Group enriched
Detected in some
adipose tissue:
52.5
bone marrow:
25.4
skin:
14.0
vagus nerve:
33.5
SLC37A4
ENSSSCG00000015105
ENSG00000137700
Glucose-6-phosphate exchanger SLC37A4
Tissue enhanced
Detected in all
epididymis:
35.1
liver:
51.8
SLC39A4
ENSSSCG00000005905
ENSG00000147804
Solute carrier family 39 member 4
Tissue enhanced
Detected in all
small intestine:
27.2
SLC39A8
ENSSSCG00000009169
ENSG00000138821
Solute carrier family 39 member 8
Tissue enhanced
Detected in many
male glands:
64.5
mesothelial tissue:
55.2
upper respiratory system:
35.1
SLC3A1
ENSSSCG00000008449
ENSG00000138079
Neutral and basic amino acid transport protein rBAT
Tissue enhanced
Detected in many
gallbladder:
19.4
kidney:
43.3
male glands:
15.4
SLC40A1
ENSSSCG00000027157
ENSG00000138449
Solute carrier family 40 member 1
Tissue enhanced
Detected in many
bone marrow:
62.4
liver:
70.2
lymphoid tissue:
58.0
SLC45A2
ENSSSCG00000016821
ENSG00000164175
Solute carrier family 45 member 2
Tissue enhanced
Detected in all
liver:
30.6
SLC5A1
ENSSSCG00000010036
ENSG00000100170
Sodium/glucose cotransporter 1
Tissue enhanced
Detected in many
ductus deferens:
32.3
gallbladder:
27.8
small intestine:
95.9
upper respiratory system:
37.0
SLC5A2
ENSSSCG00000024058
ENSG00000140675
Solute carrier family 5 member 2
Tissue enriched
Detected in all
kidney:
43.1
SLC6A19
ENSSSCG00000017120
ENSG00000174358
Solute carrier family 6 member 19
Group enriched
Detected in some
kidney:
37.1
small intestine:
51.7
SLC6A20
ENSSSCG00000028643
ENSG00000163817
Solute carrier family 6 member 20
Tissue enhanced
Detected in all
brain:
42.0
choroid plexus:
64.0
SLC6A8
ENSSSCG00000012771
ENSG00000130821
Sodium- and chloride-dependent creatine transporter 1
Low tissue specificity
Detected in many
SLC6A9
ENSSSCG00000039770
ENSG00000196517
Solute carrier family 6 member 9
Tissue enhanced
Detected in many
brain:
47.7
retina:
21.4
SLC7A7
ENSSSCG00000002041
ENSG00000155465
Y+L amino acid transporter 1
Tissue enhanced
Detected in many
kidney:
72.2
SLC7A9
ENSSSCG00000022948
ENSG00000021488
B(0,+)-type amino acid transporter 1
Tissue enhanced
Detected in all
kidney:
28.4
small intestine:
44.6
SMPD1
ENSSSCG00000014627
ENSG00000166311
Sphingomyelin phosphodiesterase 1
Low tissue specificity
Detected in all
SNAI2
ENSSSCG00000039568
ENSG00000019549
Snail family transcriptional repressor 2
Tissue enhanced
Detected in many
bone marrow:
35.6
cartilage:
27.5
SOX10
ENSSSCG00000039315
ENSG00000100146
Transcription factor SOX-10
Tissue enhanced
Detected in many
brain:
61.7
salivary gland:
39.3
vagus nerve:
94.8
SSR4
ENSSSCG00000012784
ENSG00000180879
Signal sequence receptor subunit 4
Tissue enhanced
Detected in all
male glands:
127.4
ST3GAL5
ENSSSCG00000008227
ENSG00000115525
ST3 beta-galactoside alpha-2,3-sialyltransferase 5
Low tissue specificity
Detected in all
STT3A
ENSSSCG00000015214
ENSG00000134910
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
Low tissue specificity
Detected in all
STT3B
ENSSSCG00000011229
ENSG00000163527
STT3B, catalytic subunit of the oligosaccharyltransferase complex
Low tissue specificity
Detected in all
SUCLA2
ENSSSCG00000009405
ENSG00000136143
Succinate-CoA ligase ADP-forming beta subunit
Tissue enhanced
Detected in all
skeletal muscle:
69.3
SUCLG1
ENSSSCG00000008247
ENSG00000163541
Succinate--CoA ligase
Tissue enhanced
Detected in all
skeletal muscle:
114.4
SUGCT
ENSSSCG00000035581
ENSG00000175600
Succinyl-CoA:glutarate-CoA transferase
Low tissue specificity
Detected in all
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