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Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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658 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NDUFS7
ENSSSCG00000024144
ENSG00000115286
NADH:ubiquinone oxidoreductase core subunit S7
Tissue enhanced
Detected in all
heart:
76.0
skeletal muscle:
98.1
NDUFS8
ENSSSCG00000037455
ENSG00000110717
NADH:ubiquinone oxidoreductase core subunit S8
Tissue enhanced
Detected in all
heart:
90.4
skeletal muscle:
126.3
NDUFV1
ENSSSCG00000012896
ENSG00000167792
NADH:ubiquinone oxidoreductase core subunit V1
Tissue enhanced
Detected in all
heart:
40.4
skeletal muscle:
39.1
NDUFV2
ENSSSCG00000038826
ENSG00000178127
Tissue enhanced
Detected in all
lens:
129.7
NEU1
ENSSSCG00000001418
ENSG00000204386
Sialidase-1 precursor
Low tissue specificity
Detected in all
NGLY1
ENSSSCG00000011214
ENSG00000151092
N-glycanase 1
Low tissue specificity
Detected in all
NPC1
ENSSSCG00000003707
ENSG00000141458
Niemann-Pick C1 protein precursor
Tissue enhanced
Detected in all
adrenal gland:
51.1
brain:
53.2
NPC2
ENSSSCG00000002366
ENSG00000119655
Epididymal secretory protein E1
Tissue enriched
Detected in many
epididymis:
615.2
NUBPL
ENSSSCG00000001968
ENSG00000151413
Nucleotide binding protein like
Low tissue specificity
Detected in all
NUS1
ENSSSCG00000020885
ENSG00000153989
NUS1 dehydrodolichyl diphosphate synthase subunit
Low tissue specificity
Detected in all
OCA2
ENSSSCG00000015854
ENSG00000104044
P protein
Tissue enhanced
Detected in some
brain:
11.7
choroid plexus:
26.8
kidney:
21.6
lens:
17.4
thyroid gland:
16.9
OCRL
ENSSSCG00000012650
ENSG00000122126
OCRL, inositol polyphosphate-5-phosphatase
Tissue enriched
Detected in all
ovary:
87.6
OGDH
ENSSSCG00000016743
ENSG00000105953
Oxoglutarate dehydrogenase
Low tissue specificity
Detected in all
OPA1
ENSSSCG00000011822
ENSG00000198836
OPA1, mitochondrial dynamin like GTPase
Low tissue specificity
Detected in all
OPA3
ENSSSCG00000037100
ENSG00000125741
OPA3, outer mitochondrial membrane lipid metabolism regulator
Low tissue specificity
Detected in all
OPLAH
ENSSSCG00000005911
ENSG00000178814
5-oxoprolinase, ATP-hydrolysing
Tissue enhanced
Detected in many
male glands:
45.1
salivary gland:
29.5
OXCT1
ENSSSCG00000016863
ENSG00000083720
Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
Low tissue specificity
Detected in all
PAH
ENSSSCG00000000856
ENSG00000171759
Phenylalanine hydroxylase
Tissue enriched
Detected in some
liver:
213.5
PAX3
ENSSSCG00000028418
ENSG00000135903
Paired box 3
Tissue enhanced
Detected in some
mouth:
18.8
pineal gland:
7.7
upper respiratory system:
37.7
PC
ENSSSCG00000012926
ENSG00000173599
Pyruvate carboxylase, mitochondrial
Tissue enriched
Detected in many
adipose tissue:
202.1
PCBD1
ENSSSCG00000010275
ENSG00000166228
Pterin-4-alpha-carbinolamine dehydratase
Tissue enhanced
Detected in all
liver:
105.1
PCCA
ENSSSCG00000009522
ENSG00000175198
Propionyl-CoA carboxylase alpha subunit
Tissue enhanced
Detected in all
liver:
61.5
PCCB
ENSSSCG00000011653
ENSG00000114054
Propionyl-CoA carboxylase beta chain, mitochondrial
Low tissue specificity
Detected in all
PCSK9
ENSSSCG00000025020
ENSG00000169174
Proprotein convertase subtilisin/kexin type 9
Tissue enriched
Detected in some
liver:
95.3
PDHB
ENSSSCG00000025881
ENSG00000168291
Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
Low tissue specificity
Detected in all
PDHX
ENSSSCG00000013298
ENSG00000110435
Pyruvate dehydrogenase complex component X
Low tissue specificity
Detected in all
PDP1
ENSSSCG00000006107
ENSG00000164951
Pyruvate dehyrogenase phosphatase catalytic subunit 1
Tissue enhanced
Detected in all
brain:
54.0
PEPD
ENSSSCG00000002868
ENSG00000124299
Peptidase D
Tissue enhanced
Detected in all
kidney:
60.2
PET100
ENSSSCG00000034876
ENSG00000229833
Protein PET100 homolog, mitochondrial
Tissue enhanced
Detected in all
male glands:
47.1
PEX1
ENSSSCG00000029967
ENSG00000127980
Peroxisomal biogenesis factor 1
Low tissue specificity
Detected in all
PEX10
ENSSSCG00000027916
ENSG00000157911
Peroxisomal biogenesis factor 10
Low tissue specificity
Detected in all
PEX12
ENSSSCG00000017713
ENSG00000108733
Peroxisomal biogenesis factor 12
Low tissue specificity
Detected in all
PEX13
ENSSSCG00000008387
ENSG00000162928
Peroxisomal biogenesis factor 13
Low tissue specificity
Detected in all
PEX14
ENSSSCG00000003405
ENSG00000142655
Peroxisomal biogenesis factor 14
Low tissue specificity
Detected in all
PEX16
ENSSSCG00000013267
ENSG00000121680
Peroxisomal biogenesis factor 16
Low tissue specificity
Detected in all
PEX2
ENSSSCG00000006168
ENSG00000164751
Peroxisome biogenesis factor 2
Low tissue specificity
Detected in all
PEX26
ENSSSCG00000027190
ENSG00000215193
Peroxisomal biogenesis factor 26
Low tissue specificity
Detected in all
PEX3
ENSSSCG00000004134
ENSG00000034693
Peroxisomal biogenesis factor 3
Low tissue specificity
Detected in all
PEX5
ENSSSCG00000025252
ENSG00000139197
Peroxisomal biogenesis factor 5
Low tissue specificity
Detected in all
PEX6
ENSSSCG00000001653
ENSG00000124587
Peroxisome biogenesis factor 6
Low tissue specificity
Detected in all
PEX7
ENSSSCG00000004160
ENSG00000112357
Peroxisomal biogenesis factor 7
Low tissue specificity
Detected in all
PFKM
ENSSSCG00000021129
ENSG00000152556
ATP-dependent 6-phosphofructokinase, muscle type
Tissue enhanced
Detected in many
heart:
66.0
skeletal muscle:
163.3
PGAM2
ENSSSCG00000016720
ENSG00000164708
Phosphoglycerate mutase 2
Tissue enriched
Detected in some
skeletal muscle:
191.4
PGAP1
ENSSSCG00000016073
ENSG00000197121
Post-GPI attachment to proteins 1
Low tissue specificity
Detected in all
PGAP2
ENSSSCG00000035653
ENSG00000148985
Post-GPI attachment to proteins 2
Tissue enhanced
Detected in all
epididymis:
93.7
male glands:
67.6
PGAP3
ENSSSCG00000017502
ENSG00000161395
Post-GPI attachment to proteins 3
Low tissue specificity
Detected in all
PGM1
ENSSSCG00000003812
ENSG00000079739
Phosphoglucomutase-1
Tissue enriched
Detected in all
skeletal muscle:
243.1
PHEX
ENSSSCG00000012167
ENSG00000102174
Phosphate-regulating neutral endopeptidase
Tissue enhanced
Detected in many
aorta:
17.9
upper respiratory system:
18.1
PHGDH
ENSSSCG00000006717
ENSG00000092621
D-3-phosphoglycerate dehydrogenase
Tissue enhanced
Detected in many
brain:
44.1
endometrium:
80.4
PHKA1
ENSSSCG00000012411
ENSG00000067177
Phosphorylase kinase regulatory subunit alpha 1
Tissue enriched
Detected in all
skeletal muscle:
92.2
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