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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TMEM30B
ENSSSCG00000005094
ENSG00000182107
Transmembrane protein 30B
Tissue enhanced
Detected in many
male glands:
56.3
TMEM33
ENSSSCG00000037305
ENSG00000109133
Transmembrane protein 33
Tissue enhanced
Detected in all
choroid plexus:
44.5
TMEM35A
ENSSSCG00000012490
ENSG00000126950
Transmembrane protein 35A
Tissue enhanced
Detected in many
brain:
17.4
pineal gland:
20.4
pituitary gland:
11.3
TMEM35B
ENSSSCG00000032660
ENSG00000243749
Transmembrane protein 35B
Tissue enhanced
Detected in all
choroid plexus:
49.6
TMEM38A
ENSSSCG00000013864
ENSG00000072954
Transmembrane protein 38A
Tissue enriched
Detected in many
skeletal muscle:
129.5
TMEM38B
ENSSSCG00000039896
ENSG00000095209
Trimeric intracellular cation channel type B
Low tissue specificity
Detected in all
TMEM39A
ENSSSCG00000011901
ENSG00000176142
Transmembrane protein 39A
Low tissue specificity
Detected in all
TMEM39B
ENSSSCG00000032563
ENSG00000121775
Transmembrane protein 39B
Low tissue specificity
Detected in all
TMEM41B
ENSSSCG00000014579
ENSG00000166471
Transmembrane protein 41B
Tissue enhanced
Detected in all
male glands:
43.2
TMEM42
ENSSSCG00000031576
ENSG00000169964
Transmembrane protein 42
Low tissue specificity
Detected in all
TMEM43
ENSSSCG00000011603
ENSG00000170876
Transmembrane protein 43
Low tissue specificity
Detected in all
TMEM44
ENSSSCG00000011826
ENSG00000145014
Transmembrane protein 44
Low tissue specificity
Detected in all
TMEM45A
ENSSSCG00000011965
ENSG00000181458
Transmembrane protein 45A
Tissue enhanced
Detected in all
cartilage:
21.6
TMEM45B
ENSSSCG00000015241
ENSG00000151715
Transmembrane protein 45B
Tissue enhanced
Detected in all
large intestine:
42.3
TMEM47
ENSSSCG00000024132
ENSG00000147027
Transmembrane protein 47
Tissue enhanced
Detected in all
brain:
37.2
lens:
37.9
TMEM50A
ENSSSCG00000024267
ENSG00000183726
Transmembrane protein 50A
Low tissue specificity
Detected in all
TMEM50B
ENSSSCG00000034624
ENSG00000142188
Transmembrane protein 50B
Low tissue specificity
Detected in all
TMEM51
ENSSSCG00000021026
ENSG00000171729
Transmembrane protein 51
Low tissue specificity
Detected in all
TMEM52
ENSSSCG00000028530
ENSG00000178821
Transmembrane protein 52
Tissue enhanced
Detected in many
skeletal muscle:
98.9
TMEM52B
ENSSSCG00000032431
ENSG00000165685
Transmembrane protein 52B
Group enriched
Detected in many
heart:
41.0
kidney:
48.6
retina:
19.4
TMEM53
ENSSSCG00000027423
ENSG00000126106
Transmembrane protein 53
Low tissue specificity
Detected in all
TMEM59
ENSSSCG00000034261
ENSG00000116209
Transmembrane protein 59
Tissue enhanced
Detected in all
male glands:
89.1
TMEM60
ENSSSCG00000038541
ENSG00000135211
Transmembrane protein 60
Low tissue specificity
Detected in all
TMEM61
ENSSSCG00000025097
ENSG00000143001
Transmembrane protein 61
Low tissue specificity
Detected in all
TMEM62
ENSSSCG00000004716
ENSG00000137842
Transmembrane protein 62
Tissue enhanced
Detected in all
male glands:
34.4
TMEM63A
ENSSSCG00000010854
ENSG00000196187
CSC1-like protein 1
Low tissue specificity
Detected in all
TMEM63B
ENSSSCG00000001697
ENSG00000137216
Transmembrane protein 63B
Tissue enhanced
Detected in all
stomach:
63.6
TMEM63C
ENSSSCG00000002398
ENSG00000165548
Transmembrane protein 63C
Tissue enhanced
Detected in many
brain:
33.6
TMEM64
ENSSSCG00000040180
ENSG00000180694
Transmembrane protein 64
Tissue enhanced
Detected in all
epididymis:
60.4
TMEM65
ENSSSCG00000040731
ENSG00000164983
Transmembrane protein 65
Low tissue specificity
Detected in all
TMEM67
ENSSSCG00000006108
ENSG00000164953
Transmembrane protein 67
Low tissue specificity
Detected in all
TMEM68
ENSSSCG00000006252
ENSG00000167904
Transmembrane protein 68
Low tissue specificity
Detected in all
TMEM69
ENSSSCG00000034035
ENSG00000159596
Transmembrane protein 69
Low tissue specificity
Detected in all
TMEM70
ENSSSCG00000021628
ENSG00000175606
Transmembrane protein 70
Low tissue specificity
Detected in all
TMEM71
ENSSSCG00000005951
ENSG00000165071
Transmembrane protein 71
Low tissue specificity
Detected in all
TMEM74
ENSSSCG00000006031
ENSG00000164841
Transmembrane protein 74
Tissue enhanced
Detected in many
pituitary gland:
34.3
TMEM80
ENSSSCG00000012849
ENSG00000177042
Transmembrane protein 80
Low tissue specificity
Detected in all
TMEM86A
ENSSSCG00000013360
ENSG00000151117
Transmembrane protein 86A
Low tissue specificity
Detected in all
TMEM86B
ENSSSCG00000003302
ENSG00000180089
Lysoplasmalogenase
Group enriched
Detected in many
gallbladder:
29.8
liver:
69.9
TMEM87A
ENSSSCG00000004730
ENSG00000103978
Transmembrane protein 87A
Tissue enhanced
Detected in all
male glands:
93.7
TMEM87B
ENSSSCG00000026954
ENSG00000153214
Transmembrane protein 87B
Low tissue specificity
Detected in all
TMEM88
ENSSSCG00000037096
ENSG00000167874
Transmembrane protein 88
Low tissue specificity
Detected in many
TMEM88B
ENSSSCG00000034013
ENSG00000205116
Transmembrane protein 88B
Tissue enriched
Detected in all
brain:
47.0
TMEM8A
ENSSSCG00000007985
ENSG00000129925
Transmembrane protein 8A
Tissue enhanced
Detected in many
stomach:
68.3
TMEM8B
ENSSSCG00000005325
ENSG00000137103
Transmembrane protein 8B
Tissue enhanced
Detected in all
brain:
32.6
TMEM9
ENSSSCG00000027928
ENSG00000116857
Transmembrane protein 9
Low tissue specificity
Detected in many
TMEM92
ENSSSCG00000037168
ENSG00000167105
Transmembrane protein 92
Tissue enhanced
Detected in all
large intestine:
31.6
TMEM94
ENSSSCG00000034608
ENSG00000177728
Transmembrane protein 94
Low tissue specificity
Detected in all
TMEM97
ENSSSCG00000033123
ENSG00000109084
Transmembrane protein 97
Group enriched
Detected in all
liver:
59.1
ovary:
79.5
testis:
21.4
TMEM98
ENSSSCG00000017727
ENSG00000006042
Transmembrane protein 98
Tissue enhanced
Detected in all
mesothelial tissue:
54.6
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