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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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16
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SEC16B
ENSSSCG00000039332
ENSG00000120341
SEC16 homolog B, endoplasmic reticulum export factor
Tissue enhanced
Detected in many
liver:
49.9
stomach:
26.0
SEC22A
ENSSSCG00000024904
ENSG00000121542
SEC22 homolog A, vesicle trafficking protein
Low tissue specificity
Detected in all
SEC22C
ENSSSCG00000034200
ENSG00000093183
Vesicle-trafficking protein SEC22c
Low tissue specificity
Detected in all
SEC23B
ENSSSCG00000007097
ENSG00000101310
Protein transport protein Sec23B
Low tissue specificity
Detected in all
SEC23IP
ENSSSCG00000010690
ENSG00000107651
SEC23 interacting protein
Low tissue specificity
Detected in all
SEC24A
ENSSSCG00000014304
ENSG00000113615
Protein transport protein Sec24A
Tissue enhanced
Detected in all
male glands:
76.8
SEC24B
ENSSSCG00000009142
ENSG00000138802
SEC24 homolog B, COPII coat complex component
Low tissue specificity
Detected in all
SEC24C
ENSSSCG00000010306
ENSG00000176986
SEC24 homolog C, COPII coat complex component
Low tissue specificity
Detected in all
SEC24D
ENSSSCG00000009112
ENSG00000150961
SEC24 homolog D, COPII coat complex component
Low tissue specificity
Detected in all
SEC31A
ENSSSCG00000009244
ENSG00000138674
SEC31 homolog A, COPII coat complex component
Low tissue specificity
Detected in all
SEC31B
ENSSSCG00000006165
ENSG00000075826
SEC31 homolog B, COPII coat complex component
Low tissue specificity
Detected in all
SEC61A1
ENSSSCG00000011621
ENSG00000058262
Protein transport protein Sec61 subunit alpha
Low tissue specificity
Detected in all
SEC61A2
ENSSSCG00000011114
ENSG00000065665
Sec61 translocon alpha 2 subunit
Tissue enhanced
Detected in all
brain:
41.9
testis:
54.9
SEC61B
ENSSSCG00000038914
ENSG00000106803
Protein transport protein Sec61 subunit beta
Tissue enhanced
Detected in all
male glands:
129.3
SEC61G
ENSSSCG00000035434
ENSG00000132432
Sec61 translocon gamma subunit
Low tissue specificity
Detected in all
SEC62
ENSSSCG00000029608
ENSG00000008952
Translocation protein SEC62
Tissue enhanced
Detected in all
lens:
60.7
male glands:
57.5
SEC63
ENSSSCG00000004382
ENSG00000025796
SEC63 homolog, protein translocation regulator
Low tissue specificity
Detected in all
SECISBP2
ENSSSCG00000028033
ENSG00000187742
SECIS binding protein 2
Low tissue specificity
Detected in all
SECISBP2L
ENSSSCG00000004653
ENSG00000138593
Selenocysteine insertion sequence-binding protein 2-like
Tissue enhanced
Detected in all
brain:
69.9
vagus nerve:
89.6
SEL1L
ENSSSCG00000002414
ENSG00000071537
SEL1L ERAD E3 ligase adaptor subunit
Low tissue specificity
Detected in all
SEL1L3
ENSSSCG00000022446
ENSG00000091490
SEL1L family member 3
Tissue enhanced
Detected in many
brain:
46.9
esophagus:
60.4
SELENBP1
ENSSSCG00000006624
ENSG00000143416
Selenium binding protein 1
Tissue enhanced
Detected in all
large intestine:
122.7
skin:
83.9
SELENOF
ENSSSCG00000030125
ENSG00000183291
Selenoprotein F
Tissue enhanced
Detected in all
male glands:
86.0
SELENOH
ENSSSCG00000032364
ENSG00000211450
Selenoprotein H
Low tissue specificity
Detected in all
SELENOI
ENSSSCG00000030643
ENSG00000138018
Ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
Low tissue specificity
Detected in all
SELENOM
ENSSSCG00000029781
ENSG00000198832
Selenoprotein M precursor
Tissue enhanced
Detected in many
ovary:
102.6
SELENOO
ENSSSCG00000000973
ENSG00000073169
Selenoprotein O
Low tissue specificity
Detected in all
SELENOP
ENSSSCG00000021208
ENSG00000250722
Selenoprotein P precursor
Tissue enhanced
Detected in all
liver:
184.0
ovary:
174.6
SELENOS
ENSSSCG00000004826
ENSG00000131871
Selenoprotein S
Tissue enhanced
Detected in all
male glands:
79.1
SELENOT
ENSSSCG00000036920
Selenoprotein T precursor
Low tissue specificity
Detected in all
SELENOW
ENSSSCG00000034313
ENSG00000178980
Selenoprotein W
Tissue enhanced
Detected in all
brain:
189.9
choroid plexus:
178.7
lens:
371.9
pineal gland:
187.7
SELL
ENSSSCG00000006287
ENSG00000188404
L-selectin precursor
Tissue enhanced
Detected in all
lymphoid tissue:
36.6
SELP
ENSSSCG00000006288
ENSG00000174175
P-selectin precursor
Low tissue specificity
Detected in many
SELRC1
ENSSSCG00000027119
ENSG00000162377
Sel1 repeat containing 1
Low tissue specificity
Detected in all
SEMA3A
ENSSSCG00000015398
ENSG00000075213
Semaphorin 3A
Tissue enriched
Detected in many
cartilage:
141.5
SEMA3B
ENSSSCG00000011400
ENSG00000012171
Semaphorin 3B
Tissue enhanced
Detected in many
vagus nerve:
112.4
SEMA3C
ENSSSCG00000023784
ENSG00000075223
Semaphorin 3C
Tissue enhanced
Detected in many
cartilage:
97.2
SEMA3D
ENSSSCG00000015396
ENSG00000153993
Semaphorin 3D
Group enriched
Detected in many
cartilage:
103.9
thyroid gland:
27.0
SEMA3E
ENSSSCG00000015399
ENSG00000170381
Semaphorin 3E
Tissue enhanced
Detected in many
choroid plexus:
35.4
SEMA3F
ENSSSCG00000011398
ENSG00000001617
Semaphorin 3F
Tissue enhanced
Detected in many
mesothelial tissue:
41.2
SEMA3G
ENSSSCG00000011440
ENSG00000010319
Semaphorin 3G
Low tissue specificity
Detected in many
SEMA4A
ENSSSCG00000006495
ENSG00000196189
Semaphorin 4A
Tissue enhanced
Detected in many
lymphoid tissue:
35.6
stomach:
34.4
SEMA4B
ENSSSCG00000031719
ENSG00000185033
Semaphorin 4B
Low tissue specificity
Detected in all
SEMA4C
ENSSSCG00000008197
ENSG00000168758
Semaphorin 4C
Tissue enhanced
Detected in all
vagus nerve:
60.1
SEMA4D
ENSSSCG00000009584
ENSG00000187764
Semaphorin 4D
Tissue enhanced
Detected in all
brain:
61.2
SEMA4F
ENSSSCG00000008262
ENSG00000135622
Ssemaphorin 4F
Low tissue specificity
Detected in many
SEMA4G
ENSSSCG00000029533
ENSG00000095539
Semaphorin 4G
Tissue enhanced
Detected in all
liver:
79.5
stomach:
30.8
SEMA5A
ENSSSCG00000017095
ENSG00000112902
Semaphorin 5A
Tissue enhanced
Detected in many
lens:
89.0
SEMA6A
ENSSSCG00000014224
ENSG00000092421
Semaphorin 6A
Low tissue specificity
Detected in many
SEMA6B
ENSSSCG00000035176
ENSG00000167680
Semaphorin 6B
Low tissue specificity
Detected in all
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