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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SCMH1
ENSSSCG00000003971
ENSG00000010803
Scm polycomb group protein homolog 1
Low tissue specificity
Detected in all
SCML2
ENSSSCG00000012155
ENSG00000102098
Scm polycomb group protein like 2
Tissue enhanced
Detected in all
testis:
26.0
SCML4
ENSSSCG00000033392
ENSG00000146285
Scm polycomb group protein like 4
Tissue enhanced
Detected in many
lymphoid tissue:
35.0
small intestine:
25.1
stomach:
20.2
SCN1B
ENSSSCG00000023267
ENSG00000105711
Sodium voltage-gated channel beta subunit 1
Group enriched
Detected in many
brain:
99.0
skeletal muscle:
52.5
SCN2B
ENSSSCG00000021651
ENSG00000149575
Sodium voltage-gated channel beta subunit 2
Tissue enriched
Detected in some
brain:
47.5
SCN4B
ENSSSCG00000029199
ENSG00000177098
Sodium voltage-gated channel beta subunit 4
Tissue enhanced
Detected in many
brain:
61.8
skeletal muscle:
37.7
SCN7A
ENSSSCG00000015914
ENSG00000136546
Sodium voltage-gated channel alpha subunit 7
Group enriched
Detected in many
ductus deferens:
24.9
vagus nerve:
56.7
SCN8A
ENSSSCG00000000228
ENSG00000196876
Sodium voltage-gated channel alpha subunit 8
Group enriched
Detected in many
brain:
34.5
lens:
11.0
pineal gland:
11.7
retina:
16.6
SCNM1
ENSSSCG00000006632
ENSG00000163156
Sodium channel modifier 1
Tissue enhanced
Detected in all
skeletal muscle:
22.0
SCNN1G
ENSSSCG00000007836
ENSG00000166828
Sodium channel epithelial 1 gamma subunit
Tissue enhanced
Detected in all
kidney:
30.7
stomach:
28.0
SCO1
ENSSSCG00000018008
ENSG00000133028
SCO1, cytochrome c oxidase assembly protein
Low tissue specificity
Detected in all
SCP2
ENSSSCG00000027114
ENSG00000174348
Non-specific lipid-transfer protein
Tissue enhanced
Detected in all
liver:
102.2
SCPEP1
ENSSSCG00000017617
ENSG00000121064
Serine carboxypeptidase 1
Low tissue specificity
Detected in all
SCRG1
ENSSSCG00000032048
ENSG00000164106
Stimulator of chondrogenesis 1
Tissue enhanced
Detected in all
brain:
26.9
cartilage:
29.5
SCRIB
ENSSSCG00000039466
ENSG00000180900
Scribbled planar cell polarity protein
Low tissue specificity
Detected in all
SCRN2
ENSSSCG00000017521
ENSG00000141295
Secernin 2
Tissue enhanced
Detected in all
kidney:
55.0
SCRN3
ENSSSCG00000023297
ENSG00000144306
Secernin 3
Low tissue specificity
Detected in all
SCUBE1
ENSSSCG00000000029
ENSG00000159307
Signal peptide, CUB domain and EGF like domain containing 1
Tissue enhanced
Detected in many
cervix:
50.6
endometrium:
43.3
SCUBE3
ENSSSCG00000001536
ENSG00000146197
Signal peptide, CUB domain and EGF like domain containing 3
Low tissue specificity
Detected in all
SCX
ENSSSCG00000034551
ENSG00000260428
Scleraxis bHLH transcription factor
Tissue enhanced
Detected in many
penis:
21.1
synovial tissue:
19.6
SCYL2
ENSSSCG00000000877
ENSG00000136021
SCY1 like pseudokinase 2
Low tissue specificity
Detected in all
SCYL3
ENSSSCG00000006283
ENSG00000000457
SCY1 like pseudokinase 3
Low tissue specificity
Detected in all
SDC1
ENSSSCG00000008601
ENSG00000115884
Syndecan-1 precursor
Tissue enhanced
Detected in many
cornea:
68.8
gallbladder:
85.8
ovary:
105.1
SDC2
ENSSSCG00000006088
ENSG00000169439
Syndecan-2 precursor
Tissue enhanced
Detected in all
cornea:
91.0
liver:
65.9
SDC3
ENSSSCG00000003592
ENSG00000162512
Syndecan 3
Tissue enhanced
Detected in all
brain:
64.9
cartilage:
42.7
SDC4
ENSSSCG00000038594
ENSG00000124145
Syndecan-4
Tissue enhanced
Detected in all
ovary:
95.3
SDCBP
ENSSSCG00000006237
ENSG00000137575
Syntenin-1 CG9291-PB
Low tissue specificity
Detected in all
SDCCAG3
ENSSSCG00000035221
ENSG00000165689
Serologically defined colon cancer antigen 3
Tissue enhanced
Detected in all
testis:
59.8
SDCCAG8
ENSSSCG00000035136
ENSG00000054282
Serologically defined colon cancer antigen 8
Low tissue specificity
Detected in all
SDE2
ENSSSCG00000010858
ENSG00000143751
SDE2 telomere maintenance homolog
Low tissue specificity
Detected in all
SDF2
ENSSSCG00000017772
ENSG00000132581
Stromal cell derived factor 2
Low tissue specificity
Detected in all
SDF2L1
ENSSSCG00000010085
ENSG00000128228
Stromal cell derived factor 2 like 1
Tissue enhanced
Detected in many
epididymis:
45.6
male glands:
20.4
SDF4
ENSSSCG00000003332
ENSG00000078808
Stromal cell derived factor 4
Low tissue specificity
Detected in all
SDHA
ENSSSCG00000020686
ENSG00000073578
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
Tissue enhanced
Detected in all
skeletal muscle:
87.7
SDHAF1
ENSSSCG00000024907
ENSG00000205138
Succinate dehydrogenase complex assembly factor 1
Low tissue specificity
Detected in all
SDHAF2
ENSSSCG00000013082
ENSG00000167985
Succinate dehydrogenase complex assembly factor 2
Tissue enhanced
Detected in all
lens:
64.8
SDHAF3
ENSSSCG00000023850
ENSG00000196636
Succinate dehydrogenase complex assembly factor 3
Low tissue specificity
Detected in all
SDHB
ENSSSCG00000020926
ENSG00000117118
Succinate dehydrogenase
Tissue enhanced
Detected in all
skeletal muscle:
86.3
SDHD
ENSSSCG00000015034
Succinate dehydrogenase
Low tissue specificity
Detected in all
SDK1
ENSSSCG00000007574
ENSG00000146555
Sidekick cell adhesion molecule 1
Tissue enhanced
Detected in many
lens:
57.1
SDK2
ENSSSCG00000017244
ENSG00000069188
Sidekick cell adhesion molecule 2
Tissue enhanced
Detected in many
cartilage:
46.4
SDR16C5
ENSSSCG00000006245
ENSG00000170786
Epidermal retinol dehydrogenase 2
Tissue enhanced
Detected in all
adipose tissue:
27.7
SDR39U1
ENSSSCG00000001983
ENSG00000100445
Short chain dehydrogenase/reductase family 39U member 1
Low tissue specificity
Detected in all
SDR42E1
ENSSSCG00000035182
ENSG00000184860
Short chain dehydrogenase/reductase family 42E, member 1
Low tissue specificity
Detected in all
SDR42E2
ENSSSCG00000007842
ENSG00000183921
Short chain dehydrogenase/reductase family 42E, member 2
Tissue enhanced
Detected in many
fallopian tube:
10.7
SEC11A
ENSSSCG00000029183
ENSG00000140612
SEC11 homolog A, signal peptidase complex subunit
Low tissue specificity
Detected in all
SEC11C
ENSSSCG00000004912
ENSG00000166562
SEC11 homolog C, signal peptidase complex subunit
Low tissue specificity
Detected in all
SEC13
ENSSSCG00000011572
ENSG00000157020
SEC13 homolog, nuclear pore and COPII coat complex component
Low tissue specificity
Detected in all
SEC14L1
ENSSSCG00000017169
ENSG00000129657
SEC14 like lipid binding 1
Low tissue specificity
Detected in all
SEC16A
ENSSSCG00000034854
ENSG00000148396
SEC16 homolog A, endoplasmic reticulum export factor
Low tissue specificity
Detected in all
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