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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
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Dura mater
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Fallopian tube
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Heart
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Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
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16867 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TMPRSS11F
ENSSSCG00000008930
ENSG00000198092
Transmembrane serine protease 11F
Tissue enhanced
Detected in many
cornea:
15.4
TMPRSS12
ENSSSCG00000034783
ENSG00000186452
Transmembrane serine protease 12
Tissue enhanced
Detected in many
testis:
20.7
TMPRSS13
ENSSSCG00000038710
ENSG00000137747
Transmembrane serine protease 13
Tissue enhanced
Detected in many
cornea:
8.9
mouth:
16.8
TMPRSS15
ENSSSCG00000012019
ENSG00000154646
Enteropeptidase proprotein
Tissue enriched
Detected in some
small intestine:
51.5
TMPRSS4
ENSSSCG00000015086
ENSG00000137648
Transmembrane serine protease 4
Tissue enhanced
Detected in all
ductus deferens:
33.2
large intestine:
46.9
TMPRSS9
ENSSSCG00000028363
ENSG00000178297
Transmembrane serine protease 9
Group enriched
Detected in many
epididymis:
28.4
lymphoid tissue:
12.2
TMSB10
ENSSSCG00000008245
ENSG00000034510
Thymosin beta-10
Low tissue specificity
Detected in all
TMSB4X
ENSSSCG00000012119
ENSG00000205542
Thymosin beta-4 Hematopoietic system regulatory peptide
Low tissue specificity
Detected in all
TMTC1
ENSSSCG00000027447
ENSG00000133687
Transmembrane and tetratricopeptide repeat containing 1
Tissue enhanced
Detected in many
cartilage:
53.6
TMTC2
ENSSSCG00000024065
ENSG00000179104
Transmembrane and tetratricopeptide repeat containing 2
Low tissue specificity
Detected in many
TMTC3
ENSSSCG00000000927
ENSG00000139324
Transmembrane and tetratricopeptide repeat containing 3
Low tissue specificity
Detected in all
TMTC4
ENSSSCG00000009524
ENSG00000125247
Transmembrane and TPR repeat-containing protein 4
Low tissue specificity
Detected in all
TMUB1
ENSSSCG00000028266
ENSG00000164897
Transmembrane and ubiquitin-like domain-containing protein 1
Low tissue specificity
Detected in all
TMUB2
ENSSSCG00000022837
ENSG00000168591
Transmembrane and ubiquitin like domain containing 2
Low tissue specificity
Detected in all
TMX1
ENSSSCG00000038422
ENSG00000139921
Thioredoxin related transmembrane protein 1
Tissue enhanced
Detected in all
choroid plexus:
79.9
TMX2
ENSSSCG00000013176
ENSG00000213593
Thioredoxin related transmembrane protein 2
Low tissue specificity
Detected in all
TMX3
ENSSSCG00000004884
ENSG00000166479
Thioredoxin related transmembrane protein 3
Tissue enriched
Detected in all
lens:
60.1
TMX4
ENSSSCG00000021353
ENSG00000125827
Thioredoxin-related transmembrane protein 4 precursor
Low tissue specificity
Detected in all
TNF
ENSSSCG00000001404
ENSG00000232810
Tumor necrosis factor Tumor necrosis factor, membrane form Intracellular domain 1 Intracellular domain 2 C-domain 1 C-domain 2 Tumor necrosis factor, soluble form
Low tissue specificity
Detected in all
TNFAIP1
ENSSSCG00000024626
ENSG00000109079
TNF alpha induced protein 1
Low tissue specificity
Detected in all
TNFAIP2
ENSSSCG00000036612
ENSG00000185215
TNF alpha induced protein 2
Low tissue specificity
Detected in many
TNFAIP3
ENSSSCG00000004154
ENSG00000118503
Tumor necrosis factor alpha-induced protein 3
Tissue enhanced
Detected in many
lymphoid tissue:
57.5
TNFAIP6
ENSSSCG00000023716
ENSG00000123610
Tumor necrosis factor-inducible gene 6 protein precursor
Tissue enhanced
Detected in many
mesothelial tissue:
15.2
synovial tissue:
30.4
TNFAIP8L1
ENSSSCG00000034615
ENSG00000185361
TNF alpha induced protein 8 like 1
Low tissue specificity
Detected in all
TNFAIP8L2
ENSSSCG00000006634
ENSG00000163154
Tumor necrosis factor alpha-induced protein 8-like protein 2
Low tissue specificity
Detected in all
TNFAIP8L3
ENSSSCG00000031794
ENSG00000183578
TNF alpha induced protein 8 like 3
Tissue enhanced
Detected in many
cervix:
17.7
TNFRSF11A
ENSSSCG00000004898
ENSG00000141655
TNF receptor superfamily member 11a
Low tissue specificity
Detected in many
TNFRSF12A
ENSSSCG00000027130
ENSG00000006327
TNF receptor superfamily member 12A
Tissue enhanced
Detected in many
lens:
46.6
ovary:
89.9
TNFRSF13B
ENSSSCG00000040134
ENSG00000240505
TNF receptor superfamily member 13B
Tissue enhanced
Detected in many
stomach:
18.5
TNFRSF13C
ENSSSCG00000039074
ENSG00000159958
TNF receptor superfamily member 13C
Tissue enhanced
Detected in many
lymphoid tissue:
42.7
upper respiratory system:
22.0
TNFRSF17
ENSSSCG00000032578
ENSG00000048462
TNF receptor superfamily member 17
Low tissue specificity
Detected in all
TNFRSF19
ENSSSCG00000009283
ENSG00000127863
TNF receptor superfamily member 19
Low tissue specificity
Detected in all
TNFRSF1A
ENSSSCG00000000708
ENSG00000067182
Tumor necrosis factor receptor superfamily member 1A precursor
Low tissue specificity
Detected in all
TNFRSF1B
ENSSSCG00000022208
ENSG00000028137
Tumor necrosis factor receptor superfamily member 1B precursor
Tissue enhanced
Detected in many
synovial tissue:
60.5
TNFRSF21
ENSSSCG00000001727
ENSG00000146072
TNF receptor superfamily member 21
Tissue enhanced
Detected in many
male glands:
130.1
stomach:
54.8
TNFRSF9
ENSSSCG00000003386
ENSG00000049249
Tumor necrosis factor receptor superfamily member 9
Tissue enhanced
Detected in all
lymphoid tissue:
35.3
TNFSF10
ENSSSCG00000020906
ENSG00000121858
Tumor necrosis factor ligand superfamily member 10
Tissue enhanced
Detected in all
liver:
91.0
TNFSF11
ENSSSCG00000009429
ENSG00000120659
TNF superfamily member 11
Low tissue specificity
Detected in all
TNFSF12
ENSSSCG00000040188
ENSG00000239697
Tumor necrosis factor ligand superfamily member 12
Low tissue specificity
Detected in all
TNFSF14
ENSSSCG00000026695
ENSG00000125735
Tumor necrosis factor ligand superfamily member 14
Tissue enhanced
Detected in many
stomach:
22.8
TNFSF15
ENSSSCG00000034087
ENSG00000181634
Tumor necrosis factor ligand superfamily member 15
Tissue enhanced
Detected in many
adipose tissue:
17.3
TNFSF8
ENSSSCG00000036457
ENSG00000106952
Tumor necrosis factor ligand superfamily member 8
Tissue enhanced
Detected in many
lymphoid tissue:
14.9
TNFSF9
ENSSSCG00000022370
ENSG00000125657
TNF superfamily member 9
Low tissue specificity
Detected in all
TNIK
ENSSSCG00000028905
ENSG00000154310
TRAF2 and NCK interacting kinase
Low tissue specificity
Detected in all
TNIP1
ENSSSCG00000017091
ENSG00000145901
TNFAIP3-interacting protein 1
Low tissue specificity
Detected in all
TNIP2
ENSSSCG00000008691
ENSG00000168884
TNFAIP3 interacting protein 2
Low tissue specificity
Detected in all
TNIP3
ENSSSCG00000009100
ENSG00000050730
TNFAIP3 interacting protein 3
Tissue enhanced
Detected in many
lymphoid tissue:
13.4
testis:
23.3
upper respiratory system:
23.4
TNK2
ENSSSCG00000011849
ENSG00000061938
Tyrosine kinase non receptor 2
Low tissue specificity
Detected in all
TNKS
ENSSSCG00000015851
ENSG00000173273
Tankyrase
Low tissue specificity
Detected in all
TNKS1BP1
ENSSSCG00000028527
ENSG00000149115
Tankyrase 1 binding protein 1
Low tissue specificity
Detected in all
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