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Human disease related genes
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UMAP gene cluster
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Chromosome
1
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8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
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Heart
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Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16867 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SNX4
ENSSSCG00000036828
ENSG00000114520
Sorting nexin 4
Low tissue specificity
Detected in all
SNX6
ENSSSCG00000040912
ENSG00000129515
Sorting nexin-6
Low tissue specificity
Detected in all
SNX7
ENSSSCG00000006877
ENSG00000162627
Sorting nexin 7
Low tissue specificity
Detected in all
SNX8
ENSSSCG00000040977
ENSG00000106266
Sorting nexin 8
Tissue enhanced
Detected in all
kidney:
51.2
SNX9
ENSSSCG00000030535
ENSG00000130340
Sorting nexin 9
Low tissue specificity
Detected in all
SOAT1
ENSSSCG00000021464
ENSG00000057252
Sterol O-acyltransferase 1
Tissue enhanced
Detected in all
adrenal gland:
73.7
male glands:
49.9
testis:
31.6
SOAT2
ENSSSCG00000000260
ENSG00000167780
Sterol O-acyltransferase 2
Tissue enhanced
Detected in all
liver:
40.9
SOBP
ENSSSCG00000004379
ENSG00000112320
Sine oculis binding protein homolog
Tissue enhanced
Detected in many
cartilage:
62.5
SOCS1
ENSSSCG00000027855
ENSG00000185338
Suppressor of cytokine signaling 1
Tissue enhanced
Detected in many
cartilage:
76.2
stomach:
35.0
SOCS4
ENSSSCG00000032332
ENSG00000180008
Suppressor of cytokine signaling 4
Low tissue specificity
Detected in all
SOCS5
ENSSSCG00000008437
ENSG00000171150
Suppressor of cytokine signaling 5
Low tissue specificity
Detected in all
SOCS7
ENSSSCG00000018057
ENSG00000274211
Suppressor of cytokine signaling 7
Low tissue specificity
Detected in all
SOD1
ENSSSCG00000021355
ENSG00000142168
Superoxide dismutase
Low tissue specificity
Detected in all
SOD2
ENSSSCG00000040317
ENSG00000112096,ENSG00000285441
Superoxide dismutase
Tissue enhanced
Detected in all
heart:
69.9
SOD3
ENSSSCG00000028814
ENSG00000109610
Superoxide dismutase 3
Tissue enhanced
Detected in many
cartilage:
162.0
ovary:
83.5
SOGA1
ENSSSCG00000007324
ENSG00000149639
Suppressor of glucose, autophagy associated 1
Tissue enhanced
Detected in all
brain:
46.3
SON
ENSSSCG00000023674
ENSG00000159140
SON DNA binding protein
Low tissue specificity
Detected in all
SORBS1
ENSSSCG00000010494
ENSG00000095637
Sorbin and SH3 domain containing 1
Tissue enhanced
Detected in all
smooth muscle:
127.1
SORBS2
ENSSSCG00000036679
ENSG00000154556
Sorbin and SH3 domain containing 2
Tissue enhanced
Detected in many
smooth muscle:
100.7
SORBS3
ENSSSCG00000009626
ENSG00000120896
Sorbin and SH3 domain containing 3
Low tissue specificity
Detected in all
SORCS2
ENSSSCG00000037539
ENSG00000184985
Sortilin related VPS10 domain containing receptor 2
Low tissue specificity
Detected in many
SORD
ENSSSCG00000004679
ENSG00000140263
Sorbitol dehydrogenase
Group enriched
Detected in all
kidney:
31.3
liver:
83.6
male glands:
77.4
thyroid gland:
24.1
SORL1
ENSSSCG00000015135
ENSG00000137642
Sortilin related receptor 1
Low tissue specificity
Detected in many
SORT1
ENSSSCG00000006831
ENSG00000134243
Sortilin 1
Tissue enhanced
Detected in many
brain:
52.0
epididymis:
50.6
SOS1
ENSSSCG00000008478
ENSG00000115904
SOS Ras/Rac guanine nucleotide exchange factor 1
Low tissue specificity
Detected in all
SOS2
ENSSSCG00000005015
ENSG00000100485
SOS Ras/Rho guanine nucleotide exchange factor 2
Low tissue specificity
Detected in all
SOX12
ENSSSCG00000021920
ENSG00000177732
SRY-box 12
Tissue enhanced
Detected in many
epididymis:
44.5
SOX13
ENSSSCG00000015277
ENSG00000143842
SRY-box 13
Low tissue specificity
Detected in many
SOX15
ENSSSCG00000017954
ENSG00000129194
SRY-box 15
Tissue enhanced
Detected in many
cornea:
54.5
mouth:
23.5
SOX17
ENSSSCG00000006256
ENSG00000164736
SRY-box 17
Tissue enhanced
Detected in many
endometrium:
45.6
fallopian tube:
28.2
SOX18
ENSSSCG00000037865
ENSG00000203883
SRY-box 18
Tissue enhanced
Detected in many
adipose tissue:
49.2
SOX30
ENSSSCG00000017051
ENSG00000039600
SRY-box 30
Tissue enriched
Detected in single
testis:
49.5
SOX4
ENSSSCG00000001081
ENSG00000124766
SRY-box 4
Tissue enhanced
Detected in many
cartilage:
67.4
SOX5
ENSSSCG00000000567
ENSG00000134532
SRY-box 5
Tissue enhanced
Detected in many
cartilage:
117.7
SOX6
ENSSSCG00000034191
ENSG00000110693
SRY-box 6
Tissue enhanced
Detected in many
cartilage:
71.4
SOX9
ENSSSCG00000017251
ENSG00000125398
SRY-box 9
Tissue enriched
Detected in many
cartilage:
161.2
SP1
ENSSSCG00000000272
ENSG00000185591
Sp1 transcription factor
Low tissue specificity
Detected in all
SP110
ENSSSCG00000016261
ENSG00000135899
SP110 nuclear body protein
Tissue enhanced
Detected in many
lymphoid tissue:
50.7
SP2
ENSSSCG00000017516
ENSG00000167182
Sp2 transcription factor
Low tissue specificity
Detected in all
SP3
ENSSSCG00000015962
ENSG00000172845
Sp3 transcription factor
Low tissue specificity
Detected in all
SP4
ENSSSCG00000015378
ENSG00000105866
Sp4 transcription factor
Low tissue specificity
Detected in all
SP7
ENSSSCG00000034328
ENSG00000170374
Sp7 transcription factor
Group enriched
Detected in many
bone marrow:
15.2
brain:
11.4
cartilage:
23.7
dura mater:
28.3
SP9
ENSSSCG00000036172
ENSG00000217236
Sp9 transcription factor
Tissue enriched
Detected in some
brain:
30.7
SPA17
ENSSSCG00000015197
ENSG00000064199
Sperm autoantigenic protein 17
Tissue enriched
Detected in many
testis:
61.1
SPAAR
ENSSSCG00000035872
ENSG00000235387
Small regulatory polypeptide of amino acid response
Tissue enhanced
Detected in many
adipose tissue:
45.9
heart:
42.6
SPACA1
ENSSSCG00000004308
ENSG00000118434
Sperm acrosome membrane-associated protein 1 precursor
Tissue enriched
Detected in some
testis:
72.6
SPACA3
ENSSSCG00000017726
ENSG00000141316
Sperm acrosome membrane-associated protein 3 precursor
Tissue enriched
Detected in some
testis:
52.3
SPACA4
ENSSSCG00000025441
ENSG00000177202
Sperm acrosome membrane-associated protein 4 precursor
Tissue enriched
Detected in some
testis:
101.4
SPACA5
ENSSSCG00000012285
ENSG00000171478,ENSG00000171489
Sperm acrosome-associated protein 5 precursor
Tissue enriched
Detected in single
testis:
29.0
SPACA6
ENSSSCG00000003238
ENSG00000182310
Sperm acrosome associated 6
Low tissue specificity
Detected in all
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