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UMAP gene cluster
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16867 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SAV1
ENSSSCG00000005021
ENSG00000151748
Salvador family WW domain containing protein 1
Low tissue specificity
Detected in all
SAXO1
ENSSSCG00000040408
ENSG00000155875
Stabilizer of axonemal microtubules 1
Tissue enriched
Detected in single
testis:
67.7
SAXO2
ENSSSCG00000031963
ENSG00000188659
Stabilizer of axonemal microtubules 2
Tissue enhanced
Detected in all
fallopian tube:
25.3
upper respiratory system:
26.2
SAYSD1
ENSSSCG00000033246
ENSG00000112167
SAYSVFN motif domain containing 1
Tissue enriched
Detected in all
testis:
83.1
SBDS
ENSSSCG00000007732
ENSG00000126524
Ribosome maturation protein SBDS
Tissue enhanced
Detected in all
lens:
115.3
SBF1
ENSSSCG00000000968
ENSG00000100241
Myotubularin-related protein 5
Low tissue specificity
Detected in all
SBF2
ENSSSCG00000013409
ENSG00000133812
SET binding factor 2
Low tissue specificity
Detected in all
SBNO1
ENSSSCG00000009776
ENSG00000139697
Strawberry notch homolog 1
Low tissue specificity
Detected in all
SBNO2
ENSSSCG00000030042
ENSG00000064932
Strawberry notch homolog 2
Low tissue specificity
Detected in all
SBSPON
ENSSSCG00000006183
ENSG00000164764
Somatomedin B and thrombospondin type 1 domain containing
Low tissue specificity
Detected in all
SC5D
ENSSSCG00000028517
ENSG00000109929
Sterol-C5-desaturase
Tissue enhanced
Detected in all
brain:
42.8
liver:
49.5
male glands:
37.0
SCAF1
ENSSSCG00000038807
ENSG00000126461
SR-related CTD associated factor 1
Low tissue specificity
Detected in all
SCAF11
ENSSSCG00000000806
ENSG00000139218
SR-related CTD associated factor 11
Low tissue specificity
Detected in all
SCAF4
ENSSSCG00000021023
ENSG00000156304
SR-related CTD associated factor 4
Low tissue specificity
Detected in all
SCAF8
ENSSSCG00000004070
ENSG00000213079
SR-related CTD associated factor 8
Low tissue specificity
Detected in all
SCAI
ENSSSCG00000005598
ENSG00000173611
Suppressor of cancer cell invasion
Low tissue specificity
Detected in all
SCAMP1
ENSSSCG00000034795
ENSG00000085365
Secretory carrier-associated membrane protein 1
Tissue enhanced
Detected in all
pineal gland:
37.8
SCAMP2
ENSSSCG00000001892
ENSG00000140497
Secretory carrier-associated membrane protein 2
Low tissue specificity
Detected in all
SCAMP3
ENSSSCG00000006520
ENSG00000116521
Secretory carrier-associated membrane protein 3
Low tissue specificity
Detected in all
SCAMP4
ENSSSCG00000013446
ENSG00000227500
Secretory carrier membrane protein 4
Low tissue specificity
Detected in all
SCAMP5
ENSSSCG00000001887
ENSG00000198794
Secretory carrier membrane protein 5
Tissue enhanced
Detected in many
brain:
40.0
retina:
30.2
SCAND1
ENSSSCG00000007312
ENSG00000171222
SCAN domain containing 1
Low tissue specificity
Detected in all
SCAP
ENSSSCG00000026281
ENSG00000114650
Sterol regulatory element-binding protein cleavage-activating protein
Tissue enhanced
Detected in all
ovary:
65.1
SCAPER
ENSSSCG00000001865
ENSG00000140386
S-phase cyclin A associated protein in the ER
Low tissue specificity
Detected in all
SCARA3
ENSSSCG00000020846
ENSG00000168077
Scavenger receptor class A member 3
Tissue enhanced
Detected in many
cartilage:
133.2
penis:
53.5
SCARA5
ENSSSCG00000009672
ENSG00000168079
Scavenger receptor class A member 5
Tissue enhanced
Detected in many
dura mater:
48.8
SCARB1
ENSSSCG00000009759
ENSG00000073060
Scavenger receptor class B member 1
Group enriched
Detected in all
adrenal gland:
227.5
ovary:
219.7
SCARB2
ENSSSCG00000008980
ENSG00000138760
Lysosome membrane protein 2 precursor
Low tissue specificity
Detected in all
SCARF1
ENSSSCG00000024071
ENSG00000074660
Scavenger receptor class F member 1
Low tissue specificity
Detected in many
SCART1
ENSSSCG00000010787
ENSG00000214279
Scavenger receptor family member expressed on T cells 1
Group enriched
Detected in some
lymphoid tissue:
5.8
testis:
12.5
SCCPDH
ENSSSCG00000010866
ENSG00000143653
Saccharopine dehydrogenase-like oxidoreductase
Low tissue specificity
Detected in all
SCD
ENSSSCG00000010554
ENSG00000099194
Acyl-CoA desaturase
Tissue enhanced
Detected in many
adipose tissue:
174.7
aorta:
147.9
bone marrow:
192.1
SCFD1
ENSSSCG00000001973
ENSG00000092108
Sec1 family domain containing 1
Low tissue specificity
Detected in all
SCFD2
ENSSSCG00000008836
ENSG00000184178
Sec1 family domain containing 2
Low tissue specificity
Detected in all
SCGN
ENSSSCG00000001101
ENSG00000079689
Secretagogin
Tissue enhanced
Detected in some
brain:
65.7
breast:
59.3
esophagus:
45.3
SCLT1
ENSSSCG00000029943
ENSG00000151466
Sodium channel and clathrin linker 1
Low tissue specificity
Detected in all
SCLY
ENSSSCG00000016334
ENSG00000132330
Selenocysteine lyase
Tissue enhanced
Detected in all
liver:
41.0
SCMH1
ENSSSCG00000003971
ENSG00000010803
Scm polycomb group protein homolog 1
Low tissue specificity
Detected in all
SCML2
ENSSSCG00000012155
ENSG00000102098
Scm polycomb group protein like 2
Tissue enhanced
Detected in all
testis:
26.0
SCML4
ENSSSCG00000033392
ENSG00000146285
Scm polycomb group protein like 4
Tissue enhanced
Detected in many
lymphoid tissue:
35.0
small intestine:
25.1
stomach:
20.2
SCN10A
ENSSSCG00000011260
ENSG00000185313
Sodium voltage-gated channel alpha subunit 10
Tissue enhanced
Detected in some
kidney:
3.4
retina:
8.2
testis:
3.5
SCN11A
ENSSSCG00000029419
ENSG00000168356
Sodium voltage-gated channel alpha subunit 11
Tissue enriched
Detected in some
testis:
17.3
SCN7A
ENSSSCG00000015914
ENSG00000136546
Sodium voltage-gated channel alpha subunit 7
Group enriched
Detected in many
ductus deferens:
24.9
vagus nerve:
56.7
SCN8A
ENSSSCG00000000228
ENSG00000196876
Sodium voltage-gated channel alpha subunit 8
Group enriched
Detected in many
brain:
34.5
lens:
11.0
pineal gland:
11.7
retina:
16.6
SCNM1
ENSSSCG00000006632
ENSG00000163156
Sodium channel modifier 1
Tissue enhanced
Detected in all
skeletal muscle:
22.0
SCNN1G
ENSSSCG00000007836
ENSG00000166828
Sodium channel epithelial 1 gamma subunit
Tissue enhanced
Detected in all
kidney:
30.7
stomach:
28.0
SCO1
ENSSSCG00000018008
ENSG00000133028
SCO1, cytochrome c oxidase assembly protein
Low tissue specificity
Detected in all
SCP2
ENSSSCG00000027114
ENSG00000174348
Non-specific lipid-transfer protein
Tissue enhanced
Detected in all
liver:
102.2
SCP2D1
ENSSSCG00000007099
ENSG00000132631
SCP2 sterol binding domain containing 1
Tissue enriched
Detected in single
testis:
80.7
SCPEP1
ENSSSCG00000017617
ENSG00000121064
Serine carboxypeptidase 1
Low tissue specificity
Detected in all
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