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Human disease related genes
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UMAP gene cluster
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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
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Fallopian tube
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Heart
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Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
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16867 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RNF111
ENSSSCG00000004589
ENSG00000157450
Ring finger protein 111
Low tissue specificity
Detected in all
RNF112
ENSSSCG00000034609
ENSG00000128482
Ring finger protein 112
Tissue enhanced
Detected in all
brain:
18.2
RNF114
ENSSSCG00000036129
E3 ubiquitin-protein ligase RNF114
Low tissue specificity
Detected in all
RNF115
ENSSSCG00000037355
ENSG00000265491
Ring finger protein 115
Low tissue specificity
Detected in all
RNF121
ENSSSCG00000014800
ENSG00000137522
Ring finger protein 121
Low tissue specificity
Detected in all
RNF122
ENSSSCG00000036062
ENSG00000133874
Ring finger protein 122
Low tissue specificity
Detected in all
RNF123
ENSSSCG00000011387
ENSG00000164068
Ring finger protein 123
Low tissue specificity
Detected in all
RNF125
ENSSSCG00000003729
ENSG00000101695
Ring finger protein 125
Low tissue specificity
Detected in all
RNF126
ENSSSCG00000039551
ENSG00000070423
Ring finger protein 126
Low tissue specificity
Detected in all
RNF128
ENSSSCG00000012551
ENSG00000133135
Ring finger protein 128, E3 ubiquitin protein ligase
Tissue enhanced
Detected in many
brain:
45.6
pineal gland:
28.0
RNF13
ENSSSCG00000027459
ENSG00000082996
Ring finger protein 13
Tissue enhanced
Detected in all
brain:
76.9
RNF135
ENSSSCG00000017737
ENSG00000181481
Ring finger protein 135
Low tissue specificity
Detected in all
RNF138
ENSSSCG00000003730
ENSG00000134758
Ring finger protein 138
Tissue enhanced
Detected in all
testis:
58.7
RNF139
ENSSSCG00000024412
ENSG00000170881
Ring finger protein 139
Low tissue specificity
Detected in all
RNF14
ENSSSCG00000014394
ENSG00000013561
Ring finger protein 14
Low tissue specificity
Detected in all
RNF141
ENSSSCG00000036546
ENSG00000110315
RING finger protein 141
Tissue enhanced
Detected in all
lens:
62.1
RNF144A
ENSSSCG00000008646
ENSG00000151692
Ring finger protein 144A
Tissue enhanced
Detected in all
adrenal gland:
79.0
RNF144B
ENSSSCG00000001076
ENSG00000137393
Ring finger protein 144B
Low tissue specificity
Detected in all
RNF145
ENSSSCG00000017043
ENSG00000145860
Ring finger protein 145
Tissue enhanced
Detected in all
lens:
71.7
RNF146
ENSSSCG00000004217
ENSG00000118518
Ring finger protein 146
Tissue enhanced
Detected in all
brain:
51.2
RNF149
ENSSSCG00000008168
ENSG00000163162
Ring finger protein 149
Low tissue specificity
Detected in all
RNF150
ENSSSCG00000009053
ENSG00000170153
Ring finger protein 150
Tissue enhanced
Detected in many
large intestine:
42.4
RNF151
ENSSSCG00000034728
ENSG00000179580
Ring finger protein 151
Tissue enriched
Detected in single
testis:
66.9
RNF152
ENSSSCG00000004902
ENSG00000176641
E3 ubiquitin-protein ligase RNF152
Tissue enhanced
Detected in many
choroid plexus:
60.0
kidney:
102.9
RNF157
ENSSSCG00000017186
ENSG00000141576
Ring finger protein 157
Tissue enhanced
Detected in all
brain:
38.2
stomach:
40.8
RNF166
ENSSSCG00000034455
ENSG00000158717
Ring finger protein 166
Low tissue specificity
Detected in all
RNF169
ENSSSCG00000021822
ENSG00000166439
Ring finger protein 169
Low tissue specificity
Detected in all
RNF17
ENSSSCG00000009572
ENSG00000132972
Ring finger protein 17
Tissue enriched
Detected in some
testis:
40.9
RNF170
ENSSSCG00000036001
ENSG00000120925
Ring finger protein 170
Low tissue specificity
Detected in all
RNF180
ENSSSCG00000016941
ENSG00000164197
Ring finger protein 180
Tissue enhanced
Detected in all
heart:
25.4
lens:
35.2
RNF181
ENSSSCG00000008232
ENSG00000168894
E3 ubiquitin-protein ligase RNF181
Tissue enhanced
Detected in all
lens:
77.3
RNF182
ENSSSCG00000038290
ENSG00000180537
Ring finger protein 182
Tissue enriched
Detected in some
lens:
45.8
RNF183
ENSSSCG00000027688
ENSG00000165188
Ring finger protein 183
Tissue enhanced
Detected in many
kidney:
22.7
RNF185
ENSSSCG00000010024
ENSG00000138942
Ring finger protein 185
Low tissue specificity
Detected in all
RNF19A
ENSSSCG00000006066
ENSG00000034677
E3 ubiquitin-protein ligase RNF19A
Low tissue specificity
Detected in all
RNF19B
ENSSSCG00000025206
ENSG00000116514
Ring finger protein 19B
Group enriched
Detected in all
lens:
104.6
testis:
74.8
RNF2
ENSSSCG00000015568
ENSG00000121481
Ring finger protein 2
Low tissue specificity
Detected in all
RNF20
ENSSSCG00000005399
ENSG00000155827
Ring finger protein 20
Low tissue specificity
Detected in all
RNF212B
ENSSSCG00000026237
ENSG00000215277
Ring finger protein 212B
Group enriched
Detected in some
brain:
11.6
kidney:
10.0
testis:
10.4
RNF213
ENSSSCG00000017146
ENSG00000173821
Ring finger protein 213
Tissue enhanced
Detected in all
stomach:
106.0
RNF214
ENSSSCG00000015077
ENSG00000167257
Ring finger protein 214
Low tissue specificity
Detected in all
RNF215
ENSSSCG00000010005
ENSG00000099999
Ring finger protein 215
Low tissue specificity
Detected in all
RNF216
ENSSSCG00000021285
ENSG00000011275
Ring finger protein 216
Low tissue specificity
Detected in all
RNF217
ENSSSCG00000021149
ENSG00000146373
Ring finger protein 217
Low tissue specificity
Detected in all
RNF219
ENSSSCG00000029113
ENSG00000152193
Ring finger protein 219
Low tissue specificity
Detected in all
RNF222
ENSSSCG00000017985
ENSG00000189051
Ring finger protein 222
Low tissue specificity
Detected in all
RNF227
ENSSSCG00000023166
ENSG00000179859
Ring finger protein 227
Low tissue specificity
Detected in all
RNF24
ENSSSCG00000035181
ENSG00000101236
Ring finger protein 24
Tissue enhanced
Detected in all
cartilage:
37.0
RNF25
ENSSSCG00000016202
ENSG00000163481
Ring finger protein 25
Tissue enriched
Detected in all
testis:
63.8
RNF26
ENSSSCG00000015117
ENSG00000173456
Ring finger protein 26
Low tissue specificity
Detected in all
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