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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16867 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PRKD2
ENSSSCG00000026152
ENSG00000105287
Protein kinase D2
Low tissue specificity
Detected in all
PRKD3
ENSSSCG00000008495
ENSG00000115825
Protein kinase D3
Low tissue specificity
Detected in all
PRKDC
ENSSSCG00000006274
ENSG00000253729
Protein kinase, DNA-activated, catalytic polypeptide
Low tissue specificity
Detected in all
PRKG1
ENSSSCG00000010429
ENSG00000185532
CGMP-dependent protein kinase 1
Tissue enhanced
Detected in all
smooth muscle:
48.6
PRKN
ENSSSCG00000004032
ENSG00000185345
E3 ubiquitin-protein ligase parkin
Low tissue specificity
Detected in all
PRKRA
ENSSSCG00000038254
ENSG00000180228
Protein activator of interferon induced protein kinase EIF2AK2
Low tissue specificity
Detected in all
PRKRIP1
ENSSSCG00000007684
ENSG00000128563
PRKR interacting protein 1
Low tissue specificity
Detected in all
PRM1
ENSSSCG00000021337
Sperm protamine P1
Tissue enriched
Detected in some
testis:
1334.7
PRM2
ENSSSCG00000024307
Protamine-2 precursor
Tissue enriched
Detected in some
testis:
368.9
PRM3
ENSSSCG00000035607
ENSG00000178257
Protamine 3
Tissue enriched
Detected in some
testis:
187.8
PRMT1
ENSSSCG00000003189
ENSG00000126457
Protein arginine methyltransferase 1
Low tissue specificity
Detected in all
PRMT2
ENSSSCG00000022575
ENSG00000160310
Protein arginine methyltransferase 2
Low tissue specificity
Detected in all
PRMT3
ENSSSCG00000013347
ENSG00000185238
Protein arginine methyltransferase 3
Low tissue specificity
Detected in all
PRMT5
ENSSSCG00000030045
ENSG00000100462
Protein arginine N-methyltransferase 5
Low tissue specificity
Detected in all
PRMT6
ENSSSCG00000006853
ENSG00000198890
Protein arginine N-methyltransferase 6
Low tissue specificity
Detected in all
PRMT7
ENSSSCG00000002763
ENSG00000132600
Protein arginine methyltransferase 7
Low tissue specificity
Detected in all
PRMT9
ENSSSCG00000009030
ENSG00000164169
Protein arginine methyltransferase 9
Low tissue specificity
Detected in all
PRND
ENSSSCG00000032923
ENSG00000171864
Prion like protein doppel
Tissue enriched
Detected in some
testis:
38.7
PRNP
ENSSSCG00000007039
ENSG00000171867
Prion protein
Low tissue specificity
Detected in all
PROCA1
ENSSSCG00000017770
ENSG00000167525
Protein interacting with cyclin A1
Tissue enriched
Detected in some
testis:
77.5
PROCR
ENSSSCG00000026585
ENSG00000101000
Endothelial protein C receptor precursor
Tissue enhanced
Detected in all
cartilage:
40.2
PROK2
ENSSSCG00000026200
ENSG00000163421
Prokineticin 2
Tissue enhanced
Detected in some
brain:
6.9
heart:
11.5
testis:
35.8
PROKR2
ENSSSCG00000037063
ENSG00000101292
Prokineticin receptor 2
Low tissue specificity
Detected in all
PROM1
ENSSSCG00000008745
ENSG00000007062
Prominin 1
Group enriched
Detected in many
male glands:
120.2
retina:
46.7
upper respiratory system:
41.6
PROP1
ENSSSCG00000029569
ENSG00000175325
Homeobox protein prophet of Pit-1
Tissue enriched
Detected in all
pituitary gland:
38.2
PROS1
ENSSSCG00000025463
ENSG00000184500
Protein S
Tissue enhanced
Detected in all
choroid plexus:
61.8
liver:
44.4
PROSER1
ENSSSCG00000040697
ENSG00000120685
Proline and serine rich 1
Low tissue specificity
Detected in all
PROSER2
ENSSSCG00000022247
ENSG00000148426
Proline and serine rich 2
Low tissue specificity
Detected in many
PROX1
ENSSSCG00000015584
ENSG00000117707
Prospero homeobox protein 1
Group enriched
Detected in many
lens:
191.6
liver:
61.8
PROX2
ENSSSCG00000002373
ENSG00000119608
Prospero homeobox 2
Tissue enhanced
Detected in some
lymphoid tissue:
4.4
PRPF19
ENSSSCG00000013107
ENSG00000110107
Pre-mRNA-processing factor 19
Low tissue specificity
Detected in all
PRPF3
ENSSSCG00000030119
ENSG00000117360
U4/U6 small nuclear ribonucleoprotein Prp3
Low tissue specificity
Detected in all
PRPF31
ENSSSCG00000003263
ENSG00000105618
Pre-mRNA processing factor 31
Low tissue specificity
Detected in all
PRPF38A
ENSSSCG00000028288
ENSG00000134748
Pre-mRNA processing factor 38A
Low tissue specificity
Detected in all
PRPF39
ENSSSCG00000004997
ENSG00000185246
Pre-mRNA processing factor 39
Low tissue specificity
Detected in all
PRPF4
ENSSSCG00000024648
ENSG00000136875
Pre-mRNA processing factor 4
Low tissue specificity
Detected in all
PRPF40A
ENSSSCG00000015867
ENSG00000196504
Pre-mRNA-processing factor 40 homolog A
Low tissue specificity
Detected in all
PRPF40B
ENSSSCG00000000204
ENSG00000110844
Pre-mRNA processing factor 40 homolog B
Low tissue specificity
Detected in all
PRPF4B
ENSSSCG00000001002
ENSG00000112739
Pre-mRNA processing factor 4B
Low tissue specificity
Detected in all
PRPF6
ENSSSCG00000029119
ENSG00000101161
Pre-mRNA processing factor 6
Low tissue specificity
Detected in all
PRPF8
ENSSSCG00000017817
ENSG00000174231
Pre-mRNA processing factor 8
Low tissue specificity
Detected in all
PRPH
ENSSSCG00000000195
ENSG00000135406
Peripherin
Tissue enriched
Detected in many
brain:
87.3
PRPS2
ENSSSCG00000012116
ENSG00000101911
Ribose-phosphate pyrophosphokinase 2
Tissue enriched
Detected in all
male glands:
139.6
PRPSAP1
ENSSSCG00000017184
ENSG00000161542
Phosphoribosyl pyrophosphate synthetase associated protein 1
Tissue enhanced
Detected in all
male glands:
48.8
testis:
47.7
PRR11
ENSSSCG00000024145
ENSG00000068489
Proline rich 11
Tissue enhanced
Detected in all
lymphoid tissue:
30.7
PRR12
ENSSSCG00000032668
ENSG00000126464
Proline rich 12
Low tissue specificity
Detected in all
PRR14
ENSSSCG00000007790
ENSG00000156858
Proline rich 14
Low tissue specificity
Detected in all
PRR14L
ENSSSCG00000010033
ENSG00000183530
Proline rich 14 like
Low tissue specificity
Detected in all
PRR16
ENSSSCG00000039760
ENSG00000184838
Proline rich 16
Tissue enhanced
Detected in many
adrenal gland:
54.5
pineal gland:
30.3
PRR19
ENSSSCG00000003024
ENSG00000188368
Proline rich 19
Low tissue specificity
Detected in all
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