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Human disease related genes
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UMAP gene cluster
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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16867 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PGAP2
ENSSSCG00000035653
ENSG00000148985
Post-GPI attachment to proteins 2
Tissue enhanced
Detected in all
epididymis:
93.7
male glands:
67.6
PGAP3
ENSSSCG00000017502
ENSG00000161395
Post-GPI attachment to proteins 3
Low tissue specificity
Detected in all
PGBD1
ENSSSCG00000001207
ENSG00000137338
PiggyBac transposable element derived 1
Tissue enhanced
Detected in all
brain:
29.1
PGBD2
ENSSSCG00000033305
ENSG00000185220
PiggyBac transposable element derived 2
Low tissue specificity
Detected in many
PGBD5
ENSSSCG00000021027
ENSG00000177614
PiggyBac transposable element derived 5
Tissue enhanced
Detected in many
brain:
31.3
lymphoid tissue:
21.7
PGD
ENSSSCG00000003402
ENSG00000142657
Phosphogluconate dehydrogenase
Low tissue specificity
Detected in all
PGGHG
ENSSSCG00000025023
ENSG00000142102
Protein-glucosylgalactosylhydroxylysine glucosidase
Low tissue specificity
Detected in many
PGGT1B
ENSSSCG00000014215
ENSG00000164219
Protein geranylgeranyltransferase type I subunit beta
Low tissue specificity
Detected in all
PGK1
ENSSSCG00000012440
ENSG00000102144
Phosphoglycerate kinase 1
Tissue enhanced
Detected in all
skeletal muscle:
116.8
PGK2
ENSSSCG00000001738
ENSG00000170950
Phosphoglycerate kinase 2
Tissue enriched
Detected in single
testis:
78.4
PGLS
ENSSSCG00000013878
ENSG00000130313
6-phosphogluconolactonase
Low tissue specificity
Detected in all
PGLYRP4
ENSSSCG00000006587
ENSG00000163218
Peptidoglycan recognition protein 4
Tissue enhanced
Detected in all
mouth:
22.8
PGM1
ENSSSCG00000003812
ENSG00000079739
Phosphoglucomutase-1
Tissue enriched
Detected in all
skeletal muscle:
243.1
PGM2
ENSSSCG00000008773
ENSG00000169299
Phosphoglucomutase 2
Low tissue specificity
Detected in all
PGM2L1
ENSSSCG00000014838
ENSG00000165434
Phosphoglucomutase 2 like 1
Low tissue specificity
Detected in all
PGM3
ENSSSCG00000004456
ENSG00000013375
Phosphoglucomutase 3
Tissue enhanced
Detected in all
male glands:
47.1
PGP
ENSSSCG00000036614
ENSG00000184207
Phosphoglycolate phosphatase
Tissue enhanced
Detected in all
skeletal muscle:
43.4
testis:
47.1
PGPEP1
ENSSSCG00000039684
ENSG00000130517
Pyroglutamyl-peptidase I
Low tissue specificity
Detected in all
PGPEP1L
ENSSSCG00000004811
ENSG00000183571
Pyroglutamyl-peptidase I-like
Tissue enhanced
Detected in some
mouth:
5.1
skeletal muscle:
3.3
testis:
13.8
PGRMC1
ENSSSCG00000012625
ENSG00000101856
Membrane-associated progesterone receptor component 1
Tissue enhanced
Detected in all
liver:
119.5
PGRMC2
ENSSSCG00000009072
Membrane-associated progesterone receptor component 2
Low tissue specificity
Detected in all
PGS1
ENSSSCG00000036308
ENSG00000087157
Phosphatidylglycerophosphate synthase 1
Low tissue specificity
Detected in all
PHACTR1
ENSSSCG00000001052
ENSG00000112137
Phosphatase and actin regulator 1
Tissue enriched
Detected in many
brain:
66.8
PHACTR2
ENSSSCG00000004132
ENSG00000112419
Phosphatase and actin regulator 2
Low tissue specificity
Detected in all
PHACTR4
ENSSSCG00000028973
ENSG00000204138
Phosphatase and actin regulator 4
Low tissue specificity
Detected in all
PHAX
ENSSSCG00000014244
ENSG00000164902
Phosphorylated adaptor for RNA export
Tissue enriched
Detected in all
lens:
61.9
PHB
ENSSSCG00000017549
ENSG00000167085
Prohibitin
Low tissue specificity
Detected in all
PHB2
ENSSSCG00000024655
ENSG00000215021
Prohibitin-2
Low tissue specificity
Detected in all
PHC1
ENSSSCG00000000661
ENSG00000111752
Polyhomeotic-like protein 1
Tissue enhanced
Detected in all
testis:
51.1
PHC2
ENSSSCG00000025344
ENSG00000134686
Polyhomeotic homolog 2
Low tissue specificity
Detected in all
PHC3
ENSSSCG00000030467
ENSG00000173889
Polyhomeotic homolog 3
Low tissue specificity
Detected in all
PHEX
ENSSSCG00000012167
ENSG00000102174
Phosphate-regulating neutral endopeptidase
Tissue enhanced
Detected in many
aorta:
17.9
upper respiratory system:
18.1
PHF1
ENSSSCG00000001511
ENSG00000112511
PHD finger protein 1
Low tissue specificity
Detected in all
PHF10
ENSSSCG00000030155
ENSG00000130024
PHD finger protein 10
Low tissue specificity
Detected in all
PHF11
ENSSSCG00000009396
ENSG00000136147
PHD finger protein 11
Low tissue specificity
Detected in all
PHF12
ENSSSCG00000017779
ENSG00000109118
PHD finger protein 12
Low tissue specificity
Detected in all
PHF13
ENSSSCG00000027869
ENSG00000116273
PHD finger protein 13
Low tissue specificity
Detected in all
PHF14
ENSSSCG00000026722
ENSG00000106443
PHD finger protein 14
Low tissue specificity
Detected in all
PHF19
ENSSSCG00000005510
ENSG00000119403
PHD finger protein 19
Tissue enhanced
Detected in all
cartilage:
53.7
PHF2
ENSSSCG00000008080
ENSG00000197724
PHD finger protein 2
Low tissue specificity
Detected in all
PHF20
ENSSSCG00000007311
ENSG00000025293
PHD finger protein 20
Low tissue specificity
Detected in all
PHF20L1
ENSSSCG00000005950
ENSG00000129292
PHD finger protein 20 like 1
Low tissue specificity
Detected in all
PHF21A
ENSSSCG00000023974
ENSG00000135365
PHD finger protein 21A
Tissue enhanced
Detected in all
lens:
102.4
PHF21B
ENSSSCG00000000020
ENSG00000056487
PHD finger protein 21B
Low tissue specificity
Detected in many
PHF23
ENSSSCG00000017937
ENSG00000040633
PHD finger protein 23
Low tissue specificity
Detected in all
PHF24
ENSSSCG00000005296
ENSG00000122733
PHD finger protein 24
Tissue enriched
Detected in some
brain:
39.7
PHF3
ENSSSCG00000035259
ENSG00000118482
PHD finger protein 3
Low tissue specificity
Detected in all
PHF5A
ENSSSCG00000035082
ENSG00000100410
PHD finger protein 5A
Low tissue specificity
Detected in all
PHF6
ENSSSCG00000022942
ENSG00000156531
PHD finger protein 6
Low tissue specificity
Detected in all
PHF7
ENSSSCG00000011439
ENSG00000010318
PHD finger protein 7
Tissue enriched
Detected in some
testis:
161.2
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