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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15066 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SERINC1
ENSSSCG00000004237
ENSG00000111897
Serine incorporator 1
Low tissue specificity
Detected in all
SERINC2
ENSSSCG00000023585
ENSG00000168528
Serine incorporator 2 precursor
Tissue enhanced
Detected in many
kidney:
49.3
stomach:
57.8
SERINC3
ENSSSCG00000039591
ENSG00000132824
Serine incorporator 3
Low tissue specificity
Detected in all
SERINC5
ENSSSCG00000014119
ENSG00000164300
Serine incorporator 5
Low tissue specificity
Detected in all
SERP1
ENSSSCG00000037465
ENSG00000120742
Stress-associated endoplasmic reticulum protein 1
Tissue enhanced
Detected in all
male glands:
103.7
salivary gland:
71.0
SERP2
ENSSSCG00000040405
ENSG00000151778
Stress associated endoplasmic reticulum protein family member 2
Tissue enhanced
Detected in many
brain:
26.5
pineal gland:
11.2
SERPINB1
ENSSSCG00000001011
ENSG00000021355
Serpin family B member 1
Tissue enriched
Detected in many
lens:
240.5
SERPINB10
ENSSSCG00000004889
ENSG00000242550
Serpin B10
Tissue enhanced
Detected in all
mouth:
23.4
skin:
30.9
SERPINB11
ENSSSCG00000022337
ENSG00000206072
Serpin family B member 11 (gene/pseudogene)
Tissue enhanced
Detected in all
mouth:
23.9
SERPINB2
ENSSSCG00000004890
ENSG00000197632
Serpin family B member 2
Tissue enhanced
Detected in all
heart:
32.2
SERPINB6
ENSSSCG00000038404
ENSG00000124570
Serpin family B member 6
Group enriched
Detected in all
lens:
176.6
male glands:
47.4
SERPINB7
ENSSSCG00000004891
ENSG00000166396
Serpin family B member 7
Low tissue specificity
Detected in all
SERPINB8
ENSSSCG00000004888
ENSG00000166401
Serpin family B member 8
Tissue enhanced
Detected in many
adrenal gland:
32.7
ovary:
18.3
SERPINB9
ENSSSCG00000031615
ENSG00000170542
Serpin B9
Tissue enhanced
Detected in many
lymphoid tissue:
43.9
SERPINE1
ENSSSCG00000025698
ENSG00000106366
Plasminogen activator inhibitor 1 precursor
Tissue enriched
Detected in many
ovary:
397.7
SERPINE2
ENSSSCG00000016233
ENSG00000135919
Glia-derived nexin precursor
Group enriched
Detected in many
cartilage:
193.9
ovary:
110.5
SERPINF1
ENSSSCG00000017818
ENSG00000132386
Pigment epithelium-derived factor precursor
Tissue enhanced
Detected in many
dura mater:
113.5
liver:
131.6
SERPING1
ENSSSCG00000013181
ENSG00000149131
Plasma protease C1 inhibitor precursor
Tissue enhanced
Detected in all
liver:
234.9
SERPINH1
ENSSSCG00000039468
ENSG00000149257
Serpin H1 precursor
Tissue enhanced
Detected in all
ovary:
137.3
SERTAD1
ENSSSCG00000026931
ENSG00000197019
SERTA domain containing 1
Low tissue specificity
Detected in all
SERTAD2
ENSSSCG00000037002
ENSG00000179833
SERTA domain containing 2
Low tissue specificity
Detected in all
SERTAD3
ENSSSCG00000025448
ENSG00000167565
SERTA domain-containing protein 3
Low tissue specificity
Detected in all
SERTAD4
ENSSSCG00000026404
ENSG00000082497
SERTA domain containing 4
Tissue enhanced
Detected in many
smooth muscle:
37.5
SERTM1
ENSSSCG00000040557
ENSG00000180440
Serine rich and transmembrane domain containing 1
Tissue enhanced
Detected in all
brain:
26.6
SESN1
ENSSSCG00000004390
ENSG00000080546
Sestrin 1
Tissue enhanced
Detected in all
skeletal muscle:
58.7
SESN2
ENSSSCG00000029438
ENSG00000130766
Sestrin 2
Low tissue specificity
Detected in all
SESN3
ENSSSCG00000037015
ENSG00000149212
Sestrin 3
Tissue enriched
Detected in all
lens:
145.8
SESTD1
ENSSSCG00000016005
ENSG00000187231
SEC14 and spectrin domain containing 1
Low tissue specificity
Detected in all
SETBP1
ENSSSCG00000004490
ENSG00000152217
SET binding protein 1
Low tissue specificity
Detected in all
SETD1A
ENSSSCG00000007782
ENSG00000099381
SET domain containing 1A
Low tissue specificity
Detected in all
SETD1B
ENSSSCG00000009806
ENSG00000139718
SET domain containing 1B
Low tissue specificity
Detected in all
SETD2
ENSSSCG00000011332
ENSG00000181555
SET domain containing 2
Low tissue specificity
Detected in all
SETD3
ENSSSCG00000002508
ENSG00000183576
SET domain containing 3
Low tissue specificity
Detected in all
SETD4
ENSSSCG00000028883
ENSG00000185917
SET domain containing 4
Low tissue specificity
Detected in all
SETD5
ENSSSCG00000011540
ENSG00000168137
SET domain containing 5
Low tissue specificity
Detected in all
SETD6
ENSSSCG00000026505
ENSG00000103037
SET domain containing 6
Low tissue specificity
Detected in all
SETD7
ENSSSCG00000030396
ENSG00000145391
SET domain containing lysine methyltransferase 7
Low tissue specificity
Detected in all
SETD9
ENSSSCG00000016919
ENSG00000155542
SET domain containing 9
Low tissue specificity
Detected in all
SETDB1
ENSSSCG00000006645
ENSG00000143379
SET domain bifurcated 1
Low tissue specificity
Detected in all
SETDB2
ENSSSCG00000009395
ENSG00000136169
SET domain bifurcated 2
Low tissue specificity
Detected in all
SETX
ENSSSCG00000005724
ENSG00000107290
Senataxin
Tissue enhanced
Detected in all
testis:
61.5
SEZ6
ENSSSCG00000035445
ENSG00000063015
Seizure related 6 homolog
Group enriched
Detected in some
brain:
30.0
pineal gland:
83.8
retina:
26.5
SEZ6L
ENSSSCG00000009958
ENSG00000100095
Seizure related 6 homolog like
Tissue enhanced
Detected in many
adrenal gland:
14.2
brain:
47.1
SF1
ENSSSCG00000013021
ENSG00000168066
Splicing factor 1
Low tissue specificity
Detected in all
SF3A1
ENSSSCG00000010002
ENSG00000099995
Splicing factor 3a subunit 1
Low tissue specificity
Detected in all
SF3A2
ENSSSCG00000039757
ENSG00000104897
Splicing factor 3a subunit 2
Low tissue specificity
Detected in all
SF3A3
ENSSSCG00000003643
ENSG00000183431
Splicing factor 3a subunit 3
Low tissue specificity
Detected in all
SF3B1
ENSSSCG00000016075
ENSG00000115524
Splicing factor 3b subunit 1
Low tissue specificity
Detected in all
SF3B2
ENSSSCG00000012957
ENSG00000087365
Splicing factor 3b subunit 2
Low tissue specificity
Detected in all
SF3B3
ENSSSCG00000025323
ENSG00000189091
Splicing factor 3b subunit 3
Low tissue specificity
Detected in all
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