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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15066 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SCAF4
ENSSSCG00000021023
ENSG00000156304
SR-related CTD associated factor 4
Low tissue specificity
Detected in all
SCAF8
ENSSSCG00000004070
ENSG00000213079
SR-related CTD associated factor 8
Low tissue specificity
Detected in all
SCAI
ENSSSCG00000005598
ENSG00000173611
Suppressor of cancer cell invasion
Low tissue specificity
Detected in all
SCAMP1
ENSSSCG00000034795
ENSG00000085365
Secretory carrier-associated membrane protein 1
Tissue enhanced
Detected in all
pineal gland:
37.8
SCAMP2
ENSSSCG00000001892
ENSG00000140497
Secretory carrier-associated membrane protein 2
Low tissue specificity
Detected in all
SCAMP3
ENSSSCG00000006520
ENSG00000116521
Secretory carrier-associated membrane protein 3
Low tissue specificity
Detected in all
SCAMP4
ENSSSCG00000013446
ENSG00000227500
Secretory carrier membrane protein 4
Low tissue specificity
Detected in all
SCAMP5
ENSSSCG00000001887
ENSG00000198794
Secretory carrier membrane protein 5
Tissue enhanced
Detected in many
brain:
40.0
retina:
30.2
SCAND1
ENSSSCG00000007312
ENSG00000171222
SCAN domain containing 1
Low tissue specificity
Detected in all
SCAP
ENSSSCG00000026281
ENSG00000114650
Sterol regulatory element-binding protein cleavage-activating protein
Tissue enhanced
Detected in all
ovary:
65.1
SCAPER
ENSSSCG00000001865
ENSG00000140386
S-phase cyclin A associated protein in the ER
Low tissue specificity
Detected in all
SCARA3
ENSSSCG00000020846
ENSG00000168077
Scavenger receptor class A member 3
Tissue enhanced
Detected in many
cartilage:
133.2
penis:
53.5
SCARA5
ENSSSCG00000009672
ENSG00000168079
Scavenger receptor class A member 5
Tissue enhanced
Detected in many
dura mater:
48.8
SCARB1
ENSSSCG00000009759
ENSG00000073060
Scavenger receptor class B member 1
Group enriched
Detected in all
adrenal gland:
227.5
ovary:
219.7
SCARB2
ENSSSCG00000008980
ENSG00000138760
Lysosome membrane protein 2 precursor
Low tissue specificity
Detected in all
SCARF1
ENSSSCG00000024071
ENSG00000074660
Scavenger receptor class F member 1
Low tissue specificity
Detected in many
SCARF2
ENSSSCG00000010109
ENSG00000244486
Scavenger receptor class F member 2
Low tissue specificity
Detected in many
SCCPDH
ENSSSCG00000010866
ENSG00000143653
Saccharopine dehydrogenase-like oxidoreductase
Low tissue specificity
Detected in all
SCD
ENSSSCG00000010554
ENSG00000099194
Acyl-CoA desaturase
Tissue enhanced
Detected in many
adipose tissue:
174.7
aorta:
147.9
bone marrow:
192.1
SCD5
ENSSSCG00000009245
ENSG00000145284
Stearoyl-CoA desaturase 5
Tissue enhanced
Detected in many
brain:
40.2
SCEL
ENSSSCG00000009474
ENSG00000136155
Sciellin
Tissue enhanced
Detected in many
cornea:
18.9
mouth:
63.1
skin:
32.3
SCFD1
ENSSSCG00000001973
ENSG00000092108
Sec1 family domain containing 1
Low tissue specificity
Detected in all
SCFD2
ENSSSCG00000008836
ENSG00000184178
Sec1 family domain containing 2
Low tissue specificity
Detected in all
SCG2
ENSSSCG00000023032
ENSG00000171951
Secretogranin-2 precursor
Group enriched
Detected in some
pineal gland:
170.0
pituitary gland:
272.9
SCG3
ENSSSCG00000004630
ENSG00000104112
Secretogranin III
Group enriched
Detected in many
brain:
28.7
pineal gland:
32.1
pituitary gland:
24.0
retina:
17.0
SCGB3A1
ENSSSCG00000014008
ENSG00000161055
Secretoglobin family 3A member 1
Group enriched
Detected in some
lung:
32.5
upper respiratory system:
88.8
SCIN
ENSSSCG00000015353
ENSG00000006747
Adseverin
Tissue enhanced
Detected in many
kidney:
43.1
male glands:
34.2
SCLT1
ENSSSCG00000029943
ENSG00000151466
Sodium channel and clathrin linker 1
Low tissue specificity
Detected in all
SCLY
ENSSSCG00000016334
ENSG00000132330
Selenocysteine lyase
Tissue enhanced
Detected in all
liver:
41.0
SCMH1
ENSSSCG00000003971
ENSG00000010803
Scm polycomb group protein homolog 1
Low tissue specificity
Detected in all
SCML2
ENSSSCG00000012155
ENSG00000102098
Scm polycomb group protein like 2
Tissue enhanced
Detected in all
testis:
26.0
SCN1B
ENSSSCG00000023267
ENSG00000105711
Sodium voltage-gated channel beta subunit 1
Group enriched
Detected in many
brain:
99.0
skeletal muscle:
52.5
SCN7A
ENSSSCG00000015914
ENSG00000136546
Sodium voltage-gated channel alpha subunit 7
Group enriched
Detected in many
ductus deferens:
24.9
vagus nerve:
56.7
SCN9A
ENSSSCG00000015913
ENSG00000169432
Sodium voltage-gated channel alpha subunit 9
Tissue enhanced
Detected in many
brain:
19.2
pituitary gland:
17.5
SCNM1
ENSSSCG00000006632
ENSG00000163156
Sodium channel modifier 1
Tissue enhanced
Detected in all
skeletal muscle:
22.0
SCNN1A
ENSSSCG00000000707
ENSG00000111319
Amiloride-sensitive sodium channel subunit alpha
Tissue enhanced
Detected in many
kidney:
33.8
male glands:
40.2
stomach:
37.7
SCNN1G
ENSSSCG00000007836
ENSG00000166828
Sodium channel epithelial 1 gamma subunit
Tissue enhanced
Detected in all
kidney:
30.7
stomach:
28.0
SCO1
ENSSSCG00000018008
ENSG00000133028
SCO1, cytochrome c oxidase assembly protein
Low tissue specificity
Detected in all
SCP2
ENSSSCG00000027114
ENSG00000174348
Non-specific lipid-transfer protein
Tissue enhanced
Detected in all
liver:
102.2
SCPEP1
ENSSSCG00000017617
ENSG00000121064
Serine carboxypeptidase 1
Low tissue specificity
Detected in all
SCRG1
ENSSSCG00000032048
ENSG00000164106
Stimulator of chondrogenesis 1
Tissue enhanced
Detected in all
brain:
26.9
cartilage:
29.5
SCRIB
ENSSSCG00000039466
ENSG00000180900
Scribbled planar cell polarity protein
Low tissue specificity
Detected in all
SCRN2
ENSSSCG00000017521
ENSG00000141295
Secernin 2
Tissue enhanced
Detected in all
kidney:
55.0
SCRN3
ENSSSCG00000023297
ENSG00000144306
Secernin 3
Low tissue specificity
Detected in all
SCUBE1
ENSSSCG00000000029
ENSG00000159307
Signal peptide, CUB domain and EGF like domain containing 1
Tissue enhanced
Detected in many
cervix:
50.6
endometrium:
43.3
SCUBE3
ENSSSCG00000001536
ENSG00000146197
Signal peptide, CUB domain and EGF like domain containing 3
Low tissue specificity
Detected in all
SCX
ENSSSCG00000034551
ENSG00000260428
Scleraxis bHLH transcription factor
Tissue enhanced
Detected in many
penis:
21.1
synovial tissue:
19.6
SCYL2
ENSSSCG00000000877
ENSG00000136021
SCY1 like pseudokinase 2
Low tissue specificity
Detected in all
SCYL3
ENSSSCG00000006283
ENSG00000000457
SCY1 like pseudokinase 3
Low tissue specificity
Detected in all
SDC1
ENSSSCG00000008601
ENSG00000115884
Syndecan-1 precursor
Tissue enhanced
Detected in many
cornea:
68.8
gallbladder:
85.8
ovary:
105.1
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