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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16395 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SLC16A3
ENSSSCG00000024018
ENSG00000141526
Solute carrier family 16 member 3
Tissue enhanced
Detected in many
cartilage:
38.5
lens:
26.2
skeletal muscle:
44.7
SLC16A4
ENSSSCG00000006808
ENSG00000168679
Solute carrier family 16 member 4
Low tissue specificity
Detected in all
SLC16A5
ENSSSCG00000017215
ENSG00000170190
Solute carrier family 16 member 5
Tissue enhanced
Detected in many
kidney:
28.9
urinary bladder:
51.7
SLC16A6
ENSSSCG00000017262
ENSG00000108932
Solute carrier family 16 member 6
Tissue enriched
Detected in many
choroid plexus:
84.7
SLC16A7
ENSSSCG00000000456
ENSG00000118596
Solute carrier family 16 member 7
Tissue enhanced
Detected in many
heart:
60.6
SLC16A8
ENSSSCG00000000113
ENSG00000100156
Solute carrier family 16 member 8
Low tissue specificity
Detected in many
SLC16A9
ENSSSCG00000010210
ENSG00000165449
Solute carrier family 16 member 9
Tissue enhanced
Detected in all
dura mater:
44.4
SLC17A1
ENSSSCG00000001107
ENSG00000124568
Sodium-dependent phosphate transport protein 1
Group enriched
Detected in all
kidney:
107.2
liver:
78.5
SLC17A3
ENSSSCG00000037547
ENSG00000124564
Solute carrier family 17 member 3
Low tissue specificity
Detected in all
SLC17A5
ENSSSCG00000004486
ENSG00000119899
Solute carrier family 17 member 5
Low tissue specificity
Detected in all
SLC17A8
ENSSSCG00000038946
ENSG00000179520
Solute carrier family 17 member 8
Tissue enhanced
Detected in some
brain:
9.6
liver:
6.6
retina:
6.0
SLC17A9
ENSSSCG00000040931
ENSG00000101194
Solute carrier family 17 member 9
Tissue enhanced
Detected in many
male glands:
40.3
stomach:
33.0
SLC18A2
ENSSSCG00000020671
ENSG00000165646
Synaptic vesicular amine transporter
Tissue enriched
Detected in many
brain:
65.9
SLC18B1
ENSSSCG00000004178
ENSG00000146409
Solute carrier family 18 member B1
Low tissue specificity
Detected in all
SLC19A1
ENSSSCG00000030696
ENSG00000173638
Solute carrier family 19 member 1
Tissue enhanced
Detected in all
male glands:
40.0
SLC19A2
ENSSSCG00000006290
ENSG00000117479
Thiamine transporter 1
Low tissue specificity
Detected in all
SLC19A3
ENSSSCG00000021968
ENSG00000135917
Solute carrier family 19 member 3
Tissue enhanced
Detected in many
kidney:
28.0
small intestine:
15.2
SLC1A1
ENSSSCG00000005222
ENSG00000106688
Excitatory amino acid transporter 3
Tissue enhanced
Detected in many
brain:
18.7
kidney:
15.9
small intestine:
30.8
SLC1A2
ENSSSCG00000013296
ENSG00000110436
Solute carrier family 1 member 2
Tissue enriched
Detected in some
brain:
89.6
SLC1A3
ENSSSCG00000016841
ENSG00000079215
Excitatory amino acid transporter 1 isoform 4
Tissue enriched
Detected in many
brain:
95.9
SLC1A4
ENSSSCG00000028282
ENSG00000115902
Solute carrier family 1 member 4
Tissue enhanced
Detected in many
lens:
49.8
skin:
26.5
SLC1A5
ENSSSCG00000003105
ENSG00000105281
Solute carrier family 1 member 5
Tissue enhanced
Detected in many
male glands:
70.1
SLC20A1
ENSSSCG00000032288
ENSG00000144136
Solute carrier family 20 member 1
Tissue enhanced
Detected in all
cartilage:
78.6
SLC20A2
ENSSSCG00000007027
ENSG00000168575
Solute carrier family 20 member 2
Tissue enhanced
Detected in all
choroid plexus:
50.7
SLC22A13
ENSSSCG00000011256
ENSG00000172940
Solute carrier family 22 member 13
Low tissue specificity
Detected in all
SLC22A14
ENSSSCG00000011255
ENSG00000144671
Solute carrier family 22 member 14
Tissue enriched
Detected in many
testis:
27.2
SLC22A15
ENSSSCG00000006743
ENSG00000163393
Solute carrier family 22 member 15
Low tissue specificity
Detected in many
SLC22A16
ENSSSCG00000004399
ENSG00000004809
Solute carrier family 22 member 16
Tissue enhanced
Detected in all
male glands:
27.6
SLC22A17
ENSSSCG00000002025
ENSG00000092096
Solute carrier family 22 member 17
Group enriched
Detected in many
brain:
76.7
choroid plexus:
131.9
SLC22A23
ENSSSCG00000001004
ENSG00000137266
Solute carrier family 22 member 23
Tissue enhanced
Detected in many
stomach:
63.5
upper respiratory system:
42.8
SLC22A3
ENSSSCG00000004039
ENSG00000146477
Solute carrier family 22 member 3
Tissue enhanced
Detected in all
male glands:
30.5
SLC22A4
ENSSSCG00000014275
ENSG00000197208
Solute carrier family 22 member 4
Tissue enhanced
Detected in many
male glands:
34.2
SLC22A8
ENSSSCG00000029516
ENSG00000149452
Solute carrier family 22 member 8
Tissue enriched
Detected in many
kidney:
125.6
SLC23A1
ENSSSCG00000026423
ENSG00000170482
Solute carrier family 23 member 1
Tissue enhanced
Detected in many
kidney:
50.6
male glands:
31.0
SLC23A2
ENSSSCG00000026466
ENSG00000089057
Solute carrier family 23 member 2
Group enriched
Detected in all
adrenal gland:
45.6
choroid plexus:
85.9
SLC24A1
ENSSSCG00000004937
ENSG00000074621
Solute carrier family 24 member 1
Tissue enriched
Detected in many
retina:
88.9
SLC24A3
ENSSSCG00000007100
ENSG00000185052
Solute carrier family 24 member 3
Tissue enhanced
Detected in many
brain:
52.7
SLC25A1
ENSSSCG00000010116
ENSG00000100075
Tricarboxylate transport protein, mitochondrial
Low tissue specificity
Detected in all
SLC25A11
ENSSSCG00000032472
ENSG00000108528
Solute carrier family 25 member 11
Tissue enhanced
Detected in many
skeletal muscle:
37.3
SLC25A12
ENSSSCG00000015949
ENSG00000115840
Solute carrier family 25 member 12
Tissue enhanced
Detected in all
skeletal muscle:
57.1
SLC25A13
ENSSSCG00000015336
ENSG00000004864
Solute carrier family 25 member 13
Low tissue specificity
Detected in all
SLC25A14
ENSSSCG00000012660
ENSG00000102078
Solute carrier family 25 member 14
Tissue enhanced
Detected in all
brain:
17.8
SLC25A15
ENSSSCG00000009373
ENSG00000102743
Mitochondrial ornithine transporter 1
Group enriched
Detected in all
kidney:
35.2
liver:
78.2
SLC25A16
ENSSSCG00000022303
ENSG00000122912
Solute carrier family 25 member 16
Low tissue specificity
Detected in all
SLC25A17
ENSSSCG00000000072
ENSG00000100372
Solute carrier family 25 member 17
Low tissue specificity
Detected in all
SLC25A19
ENSSSCG00000017208
ENSG00000125454
Mitochondrial thiamine pyrophosphate carrier
Low tissue specificity
Detected in all
SLC25A2
ENSSSCG00000027249
ENSG00000120329
Solute carrier family 25 member 2
Low tissue specificity
Detected in many
SLC25A20
ENSSSCG00000011366
ENSG00000178537
Solute carrier family 25 member 20
Low tissue specificity
Detected in all
SLC25A21
ENSSSCG00000039317
ENSG00000183032
Solute carrier family 25 member 21
Tissue enhanced
Detected in many
liver:
17.3
thyroid gland:
29.1
SLC25A22
ENSSSCG00000012844
ENSG00000177542
Solute carrier family 25 member 22
Tissue enhanced
Detected in all
brain:
43.3
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