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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
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11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16395 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NEB
ENSSSCG00000016397
ENSG00000183091
Nebulin
Tissue enriched
Detected in some
skeletal muscle:
369.6
NEBL
ENSSSCG00000011090
ENSG00000078114
Nebulette
Tissue enriched
Detected in many
heart:
215.3
NECAB3
ENSSSCG00000029626
ENSG00000125967
N-terminal EF-hand calcium binding protein 3
Tissue enhanced
Detected in many
brain:
24.0
NECAP1
ENSSSCG00000025179
ENSG00000089818
NECAP endocytosis associated 1
Tissue enhanced
Detected in all
pituitary gland:
46.3
NECAP2
ENSSSCG00000003477
ENSG00000157191
NECAP endocytosis associated 2
Tissue enhanced
Detected in all
lens:
77.8
NECTIN1
ENSSSCG00000015125
ENSG00000110400
Nectin-1 precursor
Tissue enhanced
Detected in many
skin:
34.6
urinary bladder:
38.1
NECTIN2
ENSSSCG00000003090
ENSG00000130202
Nectin-2 precursor
Low tissue specificity
Detected in all
NECTIN3
ENSSSCG00000011933
ENSG00000177707
Nectin cell adhesion molecule 3
Group enriched
Detected in all
lens:
124.3
liver:
50.2
male glands:
31.6
testis:
60.3
NECTIN4
ENSSSCG00000026861
ENSG00000143217
Nectin cell adhesion molecule 4
Tissue enhanced
Detected in many
cornea:
28.9
male glands:
19.1
mouth:
24.0
skin:
19.1
urinary bladder:
17.6
NEDD1
ENSSSCG00000000890
ENSG00000139350
Neural precursor cell expressed, developmentally down-regulated 1
Low tissue specificity
Detected in all
NEDD4
ENSSSCG00000037499
ENSG00000069869
Neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
Low tissue specificity
Detected in all
NEDD4L
ENSSSCG00000004919
ENSG00000049759
Neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
Low tissue specificity
Detected in all
NEDD8
ENSSSCG00000031938
ENSG00000129559
Neural precursor cell expressed, developmentally down-regulated 8
Low tissue specificity
Detected in all
NEDD8-MDP1
ENSSSCG00000033006
ENSG00000255526
NEDD8-MDP1 readthrough
Low tissue specificity
Detected in all
NEFH
ENSSSCG00000009979
ENSG00000100285
Neurofilament heavy
Tissue enriched
Detected in some
brain:
168.4
NEIL1
ENSSSCG00000001882
ENSG00000140398
Nei like DNA glycosylase 1
Tissue enhanced
Detected in all
kidney:
36.0
liver:
51.3
NEIL2
ENSSSCG00000028699
ENSG00000154328
Nei like DNA glycosylase 2
Low tissue specificity
Detected in all
NEK1
ENSSSCG00000009714
ENSG00000137601
NIMA related kinase 1
Tissue enhanced
Detected in all
lens:
79.8
NEK10
ENSSSCG00000011217
ENSG00000163491
NIMA related kinase 10
Tissue enhanced
Detected in many
fallopian tube:
24.2
lung:
17.1
testis:
14.7
upper respiratory system:
24.8
NEK11
ENSSSCG00000011181
ENSG00000114670
NIMA related kinase 11
Tissue enhanced
Detected in many
choroid plexus:
19.0
fallopian tube:
18.4
NEK3
ENSSSCG00000009379
ENSG00000136098
NIMA related kinase 3
Low tissue specificity
Detected in all
NEK4
ENSSSCG00000011446
ENSG00000114904
NIMA related kinase 4
Low tissue specificity
Detected in all
NEK6
ENSSSCG00000005587
ENSG00000119408
Serine/threonine-protein kinase Nek6
Low tissue specificity
Detected in all
NEK7
ENSSSCG00000010904
ENSG00000151414
NIMA related kinase 7
Low tissue specificity
Detected in all
NEK8
ENSSSCG00000017766
ENSG00000160602
NIMA related kinase 8
Low tissue specificity
Detected in all
NEK9
ENSSSCG00000002381
ENSG00000119638
NIMA related kinase 9
Low tissue specificity
Detected in all
NELFA
ENSSSCG00000008681
ENSG00000185049
Negative elongation factor complex member A
Low tissue specificity
Detected in all
NELFB
ENSSSCG00000005846
ENSG00000188986
Negative elongation factor B
Low tissue specificity
Detected in all
NELFCD
ENSSSCG00000007521
ENSG00000101158
Negative elongation factor D
Low tissue specificity
Detected in all
NELFE
ENSSSCG00000001423
ENSG00000204356
Negative elongation factor E
Low tissue specificity
Detected in all
NEMF
ENSSSCG00000005011
ENSG00000165525
Nuclear export mediator factor
Low tissue specificity
Detected in all
NEMP1
ENSSSCG00000025542
ENSG00000166881
Nuclear envelope integral membrane protein 1
Low tissue specificity
Detected in all
NENF
ENSSSCG00000038614
ENSG00000117691
Neudesin neurotrophic factor
Low tissue specificity
Detected in all
NEO1
ENSSSCG00000001921
ENSG00000067141
Neogenin 1
Low tissue specificity
Detected in all
NEPRO
ENSSSCG00000011923
ENSG00000163608
Nucleolus and neural progenitor protein
Low tissue specificity
Detected in all
NES
ENSSSCG00000006474
ENSG00000132688
Nestin
Group enriched
Detected in many
heart:
67.3
vagus nerve:
30.4
NET1
ENSSSCG00000023105
ENSG00000173848
Neuroepithelial cell transforming 1
Low tissue specificity
Detected in all
NEU1
ENSSSCG00000001418
ENSG00000204386
Sialidase-1 precursor
Low tissue specificity
Detected in all
NEU2
ENSSSCG00000016297
ENSG00000115488
Neuraminidase 2
Tissue enhanced
Detected in some
ductus deferens:
6.8
salivary gland:
8.0
skin:
12.2
NEU3
ENSSSCG00000021638
ENSG00000162139
Neuraminidase 3
Low tissue specificity
Detected in all
NEURL1
ENSSSCG00000010603
ENSG00000107954
Neuralized E3 ubiquitin protein ligase 1
Tissue enhanced
Detected in many
skeletal muscle:
59.4
NEURL1B
ENSSSCG00000016992
ENSG00000214357
Neuralized E3 ubiquitin protein ligase 1B
Low tissue specificity
Detected in many
NEURL2
ENSSSCG00000007430
ENSG00000124257
Neuralized E3 ubiquitin protein ligase 2
Group enriched
Detected in many
adrenal gland:
29.5
lymphoid tissue:
7.5
NEURL4
ENSSSCG00000017941
ENSG00000215041
Neuralized E3 ubiquitin protein ligase 4
Low tissue specificity
Detected in all
NF1
ENSSSCG00000017748
ENSG00000196712
Neurofibromin 1
Low tissue specificity
Detected in all
NF2
ENSSSCG00000028707
ENSG00000186575
Neurofibromin 2
Low tissue specificity
Detected in all
NFAT5
ENSSSCG00000002755
ENSG00000102908
Nuclear factor of activated T cells 5
Low tissue specificity
Detected in all
NFATC1
ENSSSCG00000004856
ENSG00000131196
Nuclear factor of activated T-cells, cytoplasmic 1
Tissue enhanced
Detected in many
cartilage:
112.0
NFATC2
ENSSSCG00000007477
ENSG00000101096
Nuclear factor of activated T-cells, cytoplasmic 2
Tissue enhanced
Detected in many
cartilage:
117.5
NFATC2IP
ENSSSCG00000007808
ENSG00000176953
NFATC2-interacting protein
Low tissue specificity
Detected in all
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