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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
YEATS2
ENSSSCG00000011776
ENSG00000163872
YEATS domain containing 2
Low tissue specificity
Detected in all
YEATS4
ENSSSCG00000037845
ENSG00000127337
YEATS domain containing 4
Low tissue specificity
Detected in all
YES1
ENSSSCG00000031942
ENSG00000176105
YES proto-oncogene 1, Src family tyrosine kinase
Low tissue specificity
Detected in all
YIF1A
ENSSSCG00000012953
ENSG00000174851
Yip1 interacting factor homolog A, membrane trafficking protein
Low tissue specificity
Detected in all
YIF1B
ENSSSCG00000002952
ENSG00000167645
Protein YIF1B
Low tissue specificity
Detected in all
YIPF1
ENSSSCG00000028506
ENSG00000058799
Yip1 domain family member 1
Low tissue specificity
Detected in all
YIPF2
ENSSSCG00000013634
ENSG00000130733
Yip1 domain family member 2
Tissue enhanced
Detected in all
male glands:
78.4
YIPF3
ENSSSCG00000033627
ENSG00000137207
Protein YIPF3
Low tissue specificity
Detected in all
YIPF4
ENSSSCG00000035747
ENSG00000119820
Yip1 domain family member 4
Low tissue specificity
Detected in all
YIPF5
ENSSSCG00000039309
ENSG00000145817
Protein YIPF5
Low tissue specificity
Detected in all
YIPF6
ENSSSCG00000028336
ENSG00000181704
Yip1 domain family member 6
Low tissue specificity
Detected in all
YJEFN3
ENSSSCG00000013935
ENSG00000250067
YjeF N-terminal domain containing 3
Tissue enhanced
Detected in some
brain:
13.0
pineal gland:
14.5
pituitary gland:
7.0
YKT6
ENSSSCG00000016750
ENSG00000106636
Synaptobrevin homolog YKT6
Low tissue specificity
Detected in all
YLPM1
ENSSSCG00000002372
ENSG00000119596
YLP motif containing 1
Low tissue specificity
Detected in all
YME1L1
ENSSSCG00000011066
ENSG00000136758
YME1 like 1 ATPase
Low tissue specificity
Detected in all
YOD1
ENSSSCG00000015659
ENSG00000180667
YOD1 deubiquitinase
Tissue enhanced
Detected in all
testis:
57.6
YPEL1
ENSSSCG00000037288
ENSG00000100027
Yippee like 1
Group enriched
Detected in many
brain:
26.2
testis:
103.5
YPEL2
ENSSSCG00000035400
ENSG00000175155
Yippee like 2
Tissue enhanced
Detected in all
lens:
54.0
YPEL3
ENSSSCG00000035430
ENSG00000090238
Yippee like 3
Low tissue specificity
Detected in all
YPEL4
ENSSSCG00000037892
ENSG00000166793
Yippee like 4
Tissue enhanced
Detected in many
brain:
22.0
YPEL5
ENSSSCG00000008529
ENSG00000119801
Yippee like 5
Low tissue specificity
Detected in all
YRDC
ENSSSCG00000040425
ENSG00000196449
YrdC N6-threonylcarbamoyltransferase domain containing
Low tissue specificity
Detected in all
YTHDC1
ENSSSCG00000035505
ENSG00000083896
YTH domain containing 1
Low tissue specificity
Detected in all
YTHDC2
ENSSSCG00000014211
ENSG00000047188
YTH domain containing 2
Low tissue specificity
Detected in all
YTHDF1
ENSSSCG00000040086
ENSG00000149658
YTH N6-methyladenosine RNA binding protein 1
Low tissue specificity
Detected in all
YTHDF2
ENSSSCG00000027686
ENSG00000198492
YTH N6-methyladenosine RNA binding protein 2
Low tissue specificity
Detected in all
YTHDF3
ENSSSCG00000033144
ENSG00000185728
YTH N6-methyladenosine RNA binding protein 3
Low tissue specificity
Detected in all
YWHAB
ENSSSCG00000007381
ENSG00000166913
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta
Low tissue specificity
Detected in all
YWHAE
ENSSSCG00000038989
ENSG00000108953
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon
Low tissue specificity
Detected in all
YWHAH
ENSSSCG00000010035
ENSG00000128245
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta
Tissue enhanced
Detected in all
brain:
69.9
lens:
98.4
pineal gland:
61.0
YWHAQ
ENSSSCG00000008638
ENSG00000134308
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta
Tissue enhanced
Detected in all
brain:
86.5
YY1
ENSSSCG00000037558
ENSG00000100811
YY1 transcription factor
Low tissue specificity
Detected in all
ZADH2
ENSSSCG00000032488
ENSG00000180011
Zinc binding alcohol dehydrogenase domain containing 2
Low tissue specificity
Detected in all
ZAP70
ENSSSCG00000008193
ENSG00000115085
Zeta chain of T cell receptor associated protein kinase 70
Tissue enhanced
Detected in many
lymphoid tissue:
44.4
stomach:
19.4
ZBED1
ENSSSCG00000031130
ENSG00000214717
Zinc finger BED-type containing 1
Low tissue specificity
Detected in all
ZBED2
ENSSSCG00000011936
ENSG00000177494
Zinc finger BED-type containing 2
Tissue enhanced
Detected in many
esophagus:
35.2
upper respiratory system:
13.9
ZBED3
ENSSSCG00000014095
ENSG00000132846
Zinc finger BED-type containing 3
Low tissue specificity
Detected in all
ZBED4
ENSSSCG00000035313
ENSG00000100426
Zinc finger BED-type containing 4
Low tissue specificity
Detected in all
ZBED5
ENSSSCG00000033411
ENSG00000236287
Zinc finger BED-type containing 5
Low tissue specificity
Detected in all
ZBED8
ENSSSCG00000038662
ENSG00000221886
Zinc finger BED-type containing 8
Low tissue specificity
Detected in all
ZBP1
ENSSSCG00000007508
ENSG00000124256
Z-DNA-binding protein 1
Tissue enhanced
Detected in many
small intestine:
29.8
stomach:
33.2
ZBTB1
ENSSSCG00000023724
ENSG00000126804
Zinc finger and BTB domain containing 1
Tissue enhanced
Detected in all
lymphoid tissue:
40.9
ZBTB10
ENSSSCG00000006155
ENSG00000205189
Zinc finger and BTB domain containing 10
Low tissue specificity
Detected in all
ZBTB11
ENSSSCG00000011953
ENSG00000066422
Zinc finger and BTB domain containing 11
Low tissue specificity
Detected in all
ZBTB12
ENSSSCG00000001421
ENSG00000204366
Zinc finger and BTB domain-containing protein 12
Low tissue specificity
Detected in all
ZBTB14
ENSSSCG00000033032
ENSG00000198081
Zinc finger and BTB domain containing 14
Low tissue specificity
Detected in all
ZBTB16
ENSSSCG00000030095
ENSG00000109906
Zinc finger and BTB domain containing 16
Tissue enhanced
Detected in many
skeletal muscle:
73.1
ZBTB17
ENSSSCG00000026103
ENSG00000116809
Zinc finger and BTB domain containing 17
Low tissue specificity
Detected in all
ZBTB18
ENSSSCG00000035213
ENSG00000179456
Zinc finger and BTB domain containing 18
Tissue enhanced
Detected in all
brain:
82.4
male glands:
34.1
ZBTB2
ENSSSCG00000004090
ENSG00000181472
Zinc finger and BTB domain containing 2
Low tissue specificity
Detected in all
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