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Keyword
Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
UNC5B
ENSSSCG00000010276
ENSG00000107731
Netrin receptor UNC5B precursor
Tissue enhanced
Detected in many
male glands:
52.4
UNC5C
ENSSSCG00000021874
ENSG00000182168
Unc-5 netrin receptor C
Tissue enhanced
Detected in many
brain:
24.2
cornea:
34.2
UNC5CL
ENSSSCG00000027922
ENSG00000124602
Unc-5 family C-terminal like
Tissue enhanced
Detected in all
large intestine:
24.3
small intestine:
23.8
UNC5D
ENSSSCG00000015830
ENSG00000156687
Unc-5 netrin receptor D
Tissue enhanced
Detected in many
brain:
18.0
kidney:
15.8
UNC93B1
ENSSSCG00000012893
ENSG00000110057
Unc-93 homolog B1, TLR signaling regulator
Low tissue specificity
Detected in all
UNG
ENSSSCG00000009938
ENSG00000076248
Uracil DNA glycosylase
Tissue enhanced
Detected in all
male glands:
52.5
UNK
ENSSSCG00000017201
ENSG00000132478
Unkempt family zinc finger
Low tissue specificity
Detected in all
UPB1
ENSSSCG00000010060
ENSG00000100024
Beta-ureidopropionase 1
Group enriched
Detected in all
kidney:
78.6
liver:
120.3
UPF1
ENSSSCG00000039301
ENSG00000005007
UPF1, RNA helicase and ATPase
Low tissue specificity
Detected in all
UPF3A
ENSSSCG00000024679
ENSG00000169062
UPF3A, regulator of nonsense mediated mRNA decay
Tissue enhanced
Detected in many
brain:
16.9
pineal gland:
16.5
pituitary gland:
18.6
testis:
20.6
UPF3B
ENSSSCG00000012617
ENSG00000125351
UPF3B, regulator of nonsense mediated mRNA decay
Low tissue specificity
Detected in all
UPK3A
ENSSSCG00000031423
ENSG00000100373
Uroplakin 3A
Low tissue specificity
Detected in all
UPP1
ENSSSCG00000030388
ENSG00000183696
Uridine phosphorylase 1
Tissue enhanced
Detected in many
male glands:
66.1
mouth:
19.9
UPRT
ENSSSCG00000012425
ENSG00000094841
Uracil phosphoribosyltransferase homolog
Low tissue specificity
Detected in all
UQCC1
ENSSSCG00000038237
ENSG00000101019
Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
Low tissue specificity
Detected in all
UQCC2
ENSSSCG00000030668
ENSG00000137288
Uncharacterized protein LOC100153818
Tissue enhanced
Detected in all
skeletal muscle:
46.1
UQCC3
ENSSSCG00000038370
ENSG00000204922
Ubiquinol-cytochrome c reductase complex assembly factor 3
Low tissue specificity
Detected in all
UQCR10
ENSSSCG00000024550
ENSG00000184076
Cytochrome b-c1 complex subunit 9
Tissue enhanced
Detected in all
skeletal muscle:
106.0
UQCRC1
ENSSSCG00000011356
ENSG00000010256
Ubiquinol-cytochrome c reductase core protein 1
Tissue enhanced
Detected in all
heart:
101.2
skeletal muscle:
104.1
UQCRC2
ENSSSCG00000007845
ENSG00000140740
Ubiquinol-cytochrome c reductase core protein 2
Tissue enhanced
Detected in all
skeletal muscle:
72.0
UQCRQ
ENSSSCG00000014289
ENSG00000164405
Ubiquinol-cytochrome c reductase complex III subunit VII
Tissue enhanced
Detected in all
choroid plexus:
69.6
heart:
66.3
skeletal muscle:
67.5
URB1
ENSSSCG00000032024
ENSG00000142207
URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
Low tissue specificity
Detected in all
URB2
ENSSSCG00000010186
ENSG00000135763
URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
Low tissue specificity
Detected in all
URGCP
ENSSSCG00000040519
ENSG00000106608
Upregulator of cell proliferation
Low tissue specificity
Detected in all
URI1
ENSSSCG00000025912
ENSG00000105176
URI1, prefoldin like chaperone
Low tissue specificity
Detected in all
URM1
ENSSSCG00000005649
ENSG00000167118
Ubiquitin-related modifier 1
Low tissue specificity
Detected in all
UROC1
ENSSSCG00000001823
ENSG00000159650
Urocanate hydratase
Tissue enriched
Detected in all
liver:
93.2
UROD
ENSSSCG00000003922
ENSG00000126088
Uroporphyrinogen decarboxylase
Low tissue specificity
Detected in all
UROS
ENSSSCG00000010742
ENSG00000188690
Uroporphyrinogen-III synthase isoform 2
Low tissue specificity
Detected in all
USB1
ENSSSCG00000002807
ENSG00000103005
U6 snRNA phosphodiesterase
Low tissue specificity
Detected in all
USE1
ENSSSCG00000013875
ENSG00000053501
Unconventional SNARE in the ER 1
Low tissue specificity
Detected in all
USF1
ENSSSCG00000006371
ENSG00000158773
Upstream stimulatory factor 1
Low tissue specificity
Detected in all
USF2
ENSSSCG00000002885
ENSG00000105698
Upstream transcription factor 2, c-fos interacting
Low tissue specificity
Detected in all
USF3
ENSSSCG00000011918
ENSG00000176542
Basic helix-loop-helix domain-containing protein USF3
Low tissue specificity
Detected in all
USHBP1
ENSSSCG00000036575
ENSG00000130307
USH1 protein network component harmonin binding protein 1
Low tissue specificity
Detected in many
USO1
ENSSSCG00000008971
ENSG00000138768
USO1 vesicle transport factor
Low tissue specificity
Detected in all
USP1
ENSSSCG00000003820
ENSG00000162607
Ubiquitin specific peptidase 1
Tissue enhanced
Detected in all
testis:
58.7
USP10
ENSSSCG00000002670
ENSG00000103194
Ubiquitin specific peptidase 10
Tissue enhanced
Detected in all
lens:
103.5
USP11
ENSSSCG00000012273
ENSG00000102226
Ubiquitin specific peptidase 11
Low tissue specificity
Detected in all
USP12
ENSSSCG00000009302
ENSG00000152484
Ubiquitin specific peptidase 12
Low tissue specificity
Detected in all
USP13
ENSSSCG00000011765
ENSG00000058056
Ubiquitin specific peptidase 13
Group enriched
Detected in many
heart:
60.7
skeletal muscle:
68.4
USP14
ENSSSCG00000022559
ENSG00000101557
Ubiquitin specific peptidase 14
Low tissue specificity
Detected in all
USP15
ENSSSCG00000000457
ENSG00000135655
Ubiquitin specific peptidase 15
Low tissue specificity
Detected in all
USP16
ENSSSCG00000027594
ENSG00000156256
Ubiquitin specific peptidase 16
Low tissue specificity
Detected in all
USP18
ENSSSCG00000000774
ENSG00000161133,ENSG00000184979
Ubl carboxyl-terminal hydrolase 18
Low tissue specificity
Detected in many
USP19
ENSSSCG00000011375
ENSG00000172046
Ubiquitin carboxyl-terminal hydrolase 19
Low tissue specificity
Detected in all
USP2
ENSSSCG00000015120
ENSG00000036672
Ubiquitin specific peptidase 2
Tissue enhanced
Detected in many
skeletal muscle:
56.0
testis:
58.7
USP20
ENSSSCG00000024341
ENSG00000136878
Ubiquitin specific peptidase 20
Low tissue specificity
Detected in all
USP21
ENSSSCG00000006362
ENSG00000143258
Ubiquitin specific peptidase 21
Low tissue specificity
Detected in all
USP22
ENSSSCG00000035671
ENSG00000124422
Ubiquitin specific peptidase 22
Low tissue specificity
Detected in all
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