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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
UBE2D2
ENSSSCG00000036711
ENSG00000131508
Ubiquitin conjugating enzyme E2 D2
Tissue enhanced
Detected in all
lens:
164.5
UBE2D3
ENSSSCG00000035622
Ubiquitin-conjugating enzyme E2 D2
Low tissue specificity
Detected in all
UBE2D4
ENSSSCG00000016722
ENSG00000078967
Ubiquitin conjugating enzyme E2 D4 (putative)
Tissue enhanced
Detected in all
skeletal muscle:
119.7
UBE2E2
ENSSSCG00000011209
ENSG00000182247
Ubiquitin conjugating enzyme E2 E2
Tissue enhanced
Detected in all
lens:
53.3
UBE2G1
ENSSSCG00000017878
ENSG00000132388
Ubiquitin conjugating enzyme E2 G1
Tissue enhanced
Detected in all
skeletal muscle:
64.4
UBE2G2
ENSSSCG00000027165
ENSG00000184787
Ubiquitin conjugating enzyme E2 G2
Low tissue specificity
Detected in all
UBE2H
ENSSSCG00000016564
ENSG00000186591
Ubiquitin conjugating enzyme E2 H
Low tissue specificity
Detected in all
UBE2I
ENSSSCG00000021560
ENSG00000103275
SUMO-conjugating enzyme UBC9
Low tissue specificity
Detected in all
UBE2J1
ENSSSCG00000004317
ENSG00000198833
Ubiquitin-conjugating enzyme E2 J1
Low tissue specificity
Detected in all
UBE2J2
ENSSSCG00000003334
ENSG00000160087
Ubiquitin conjugating enzyme E2 J2
Low tissue specificity
Detected in all
UBE2K
ENSSSCG00000033602
ENSG00000078140
Ubiquitin-conjugating enzyme E2 K
Low tissue specificity
Detected in all
UBE2L6
ENSSSCG00000023379
ENSG00000156587
Ubiquitin/ISG15-conjugating enzyme E2 L6
Low tissue specificity
Detected in all
UBE2M
ENSSSCG00000037734
ENSG00000130725
Ubiquitin conjugating enzyme E2 M
Low tissue specificity
Detected in all
UBE2O
ENSSSCG00000029901
ENSG00000175931
Ubiquitin conjugating enzyme E2 O
Low tissue specificity
Detected in all
UBE2Q1
ENSSSCG00000006544
ENSG00000160714
Ubiquitin conjugating enzyme E2 Q1
Low tissue specificity
Detected in all
UBE2QL1
ENSSSCG00000035825
ENSG00000215218
Ubiquitin conjugating enzyme E2 Q family like 1
Tissue enhanced
Detected in all
brain:
29.4
UBE2R2
ENSSSCG00000034725
ENSG00000107341
Ubiquitin conjugating enzyme E2 R2
Low tissue specificity
Detected in all
UBE2S
ENSSSCG00000035344
ENSG00000108106
Ubiquitin conjugating enzyme E2 S
Low tissue specificity
Detected in all
UBE2T
ENSSSCG00000010923
ENSG00000077152
Ubiquitin conjugating enzyme E2 T
Low tissue specificity
Detected in many
UBE2V1
ENSSSCG00000030632
ENSG00000244687
Ubiquitin-conjugating enzyme E2 variant 1
Low tissue specificity
Detected in all
UBE2V2
ENSSSCG00000022190
ENSG00000169139
Ubiquitin-conjugating enzyme E2 variant 2
Low tissue specificity
Detected in all
UBE2W
ENSSSCG00000006177
ENSG00000104343
Ubiquitin-conjugating enzyme E2 W
Low tissue specificity
Detected in all
UBE2Z
ENSSSCG00000025638
ENSG00000159202
Ubiquitin conjugating enzyme E2 Z
Low tissue specificity
Detected in all
UBE3A
ENSSSCG00000004832
ENSG00000114062
Ubiquitin-protein ligase E3A isoform 1
Low tissue specificity
Detected in all
UBE3B
ENSSSCG00000009933
ENSG00000151148
Ubiquitin protein ligase E3B
Low tissue specificity
Detected in all
UBE3C
ENSSSCG00000016409
ENSG00000009335
Ubiquitin protein ligase E3C
Low tissue specificity
Detected in all
UBE3D
ENSSSCG00000026346
ENSG00000118420
Ubiquitin protein ligase E3D
Low tissue specificity
Detected in many
UBE4A
ENSSSCG00000015095
ENSG00000110344
Ubiquitin conjugation factor E4 A
Low tissue specificity
Detected in all
UBE4B
ENSSSCG00000003398
ENSG00000130939
Ubiquitination factor E4B
Low tissue specificity
Detected in all
UBFD1
ENSSSCG00000040265
ENSG00000103353
Ubiquitin family domain containing 1
Low tissue specificity
Detected in all
UBIAD1
ENSSSCG00000037325
ENSG00000120942
UbiA prenyltransferase domain containing 1
Low tissue specificity
Detected in all
UBL3
ENSSSCG00000035992
ENSG00000122042
Ubiquitin like 3
Low tissue specificity
Detected in all
UBL4A
ENSSSCG00000037387
ENSG00000102178
Ubiquitin like 4A
Low tissue specificity
Detected in all
UBL4B
ENSSSCG00000028425
ENSG00000186150
Ubiquitin like 4B
Tissue enriched
Detected in some
testis:
85.7
UBL7
ENSSSCG00000001907
ENSG00000138629
Ubiquitin-like protein 7
Tissue enhanced
Detected in all
lens:
61.2
UBLCP1
ENSSSCG00000017042
ENSG00000164332
Ubiquitin like domain containing CTD phosphatase 1
Low tissue specificity
Detected in all
UBN1
ENSSSCG00000007924
ENSG00000118900
Ubinuclein 1
Low tissue specificity
Detected in all
UBN2
ENSSSCG00000016510
ENSG00000157741
Ubinuclein 2
Low tissue specificity
Detected in all
UBOX5
ENSSSCG00000007162
ENSG00000185019
U-box domain containing 5
Low tissue specificity
Detected in all
UBP1
ENSSSCG00000011235
ENSG00000153560
Upstream binding protein 1
Low tissue specificity
Detected in all
UBQLN1
ENSSSCG00000021005
ENSG00000135018
Ubiquilin 1
Low tissue specificity
Detected in all
UBQLN2
ENSSSCG00000035264
ENSG00000188021
Ubiquilin 2
Low tissue specificity
Detected in all
UBQLN4
ENSSSCG00000006500
ENSG00000160803
Ubiquilin 4
Low tissue specificity
Detected in all
UBR1
ENSSSCG00000004717
ENSG00000159459
Ubiquitin protein ligase E3 component n-recognin 1
Low tissue specificity
Detected in all
UBR2
ENSSSCG00000001641
ENSG00000024048
Ubiquitin protein ligase E3 component n-recognin 2
Low tissue specificity
Detected in all
UBR3
ENSSSCG00000015940
ENSG00000144357
Ubiquitin protein ligase E3 component n-recognin 3 (putative)
Low tissue specificity
Detected in all
UBR4
ENSSSCG00000003488
ENSG00000127481
Ubiquitin protein ligase E3 component n-recognin 4
Low tissue specificity
Detected in all
UBR5
ENSSSCG00000022479
ENSG00000104517
Ubiquitin protein ligase E3 component n-recognin 5
Low tissue specificity
Detected in all
UBR7
ENSSSCG00000002460
ENSG00000012963
Ubiquitin protein ligase E3 component n-recognin 7 (putative)
Low tissue specificity
Detected in all
UBTD1
ENSSSCG00000010521
ENSG00000165886
Ubiquitin domain containing 1
Low tissue specificity
Detected in all
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