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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TSPAN15
ENSSSCG00000036152
ENSG00000099282
Tetraspanin 15
Tissue enhanced
Detected in many
lens:
89.8
TSPAN17
ENSSSCG00000014051
ENSG00000048140
Tetraspanin 17
Tissue enhanced
Detected in all
retina:
44.9
TSPAN18
ENSSSCG00000013278
ENSG00000157570
Tetraspanin 18
Tissue enhanced
Detected in many
smooth muscle:
43.6
TSPAN19
ENSSSCG00000040399
ENSG00000231738
Tetraspanin 19
Tissue enhanced
Detected in all
upper respiratory system:
21.7
TSPAN2
ENSSSCG00000006748
ENSG00000134198
Tetraspanin 2
Tissue enhanced
Detected in many
cervix:
42.1
smooth muscle:
36.8
TSPAN3
ENSSSCG00000001868
ENSG00000140391
Tetraspanin-3
Low tissue specificity
Detected in all
TSPAN31
ENSSSCG00000036731
ENSG00000135452
Tetraspanin 31
Tissue enhanced
Detected in all
male glands:
63.9
TSPAN33
ENSSSCG00000016570
ENSG00000158457
Tetraspanin 33
Tissue enhanced
Detected in many
brain:
60.3
breast:
28.9
male glands:
41.7
TSPAN4
ENSSSCG00000012838
ENSG00000214063
Tetraspanin 4
Low tissue specificity
Detected in all
TSPAN5
ENSSSCG00000029813
ENSG00000168785
Tetraspanin 5
Tissue enhanced
Detected in many
brain:
34.8
TSPAN6
ENSSSCG00000012481
ENSG00000000003
Tetraspanin-6
Tissue enriched
Detected in many
testis:
106.4
TSPAN9
ENSSSCG00000000735
ENSG00000011105
Tetraspanin-9
Low tissue specificity
Detected in all
TSPO
ENSSSCG00000000033
ENSG00000100300
Translocator protein
Low tissue specificity
Detected in many
TSPO2
ENSSSCG00000038553
ENSG00000112212
Translocator protein 2
Low tissue specificity
Detected in all
TSPOAP1
ENSSSCG00000017638
ENSG00000005379
TSPO associated protein 1
Tissue enhanced
Detected in many
brain:
20.1
TSPYL1
ENSSSCG00000004438
ENSG00000189241
TSPY like 1
Low tissue specificity
Detected in all
TSPYL2
ENSSSCG00000012323
ENSG00000184205
TSPY like 2
Tissue enhanced
Detected in all
epididymis:
63.9
TSPYL4
ENSSSCG00000004439
ENSG00000187189
TSPY like 4
Tissue enhanced
Detected in many
brain:
81.1
pineal gland:
45.2
retina:
25.6
TSPYL5
ENSSSCG00000033112
ENSG00000180543
TSPY like 5
Tissue enhanced
Detected in many
brain:
19.9
pituitary gland:
18.7
TSR1
ENSSSCG00000038534
ENSG00000167721
TSR1, ribosome maturation factor
Low tissue specificity
Detected in all
TSR2
ENSSSCG00000012334
ENSG00000158526
TSR2, ribosome maturation factor
Low tissue specificity
Detected in all
TSR3
ENSSSCG00000008030
ENSG00000007520
TSR3, acp transferase ribosome maturation factor
Low tissue specificity
Detected in all
TSSC4
ENSSSCG00000036015
ENSG00000184281
Tumor suppressing subtransferable candidate 4
Low tissue specificity
Detected in all
TSSK4
ENSSSCG00000025470
ENSG00000139908
Testis-specific serine/threonine-protein kinase 4
Tissue enhanced
Detected in all
testis:
44.9
TST
ENSSSCG00000000133
ENSG00000128311
Thiosulfate sulfurtransferase
Tissue enhanced
Detected in all
liver:
69.4
TSTA3
ENSSSCG00000031698
ENSG00000104522
Tissue specific transplantation antigen P35B
Tissue enhanced
Detected in all
male glands:
54.2
TSTD1
ENSSSCG00000006370
ENSG00000215845
Thiosulfate sulfurtransferase like domain containing 1
Tissue enhanced
Detected in many
male glands:
50.7
TSTD2
ENSSSCG00000005367
ENSG00000136925
Thiosulfate sulfurtransferase like domain containing 2
Low tissue specificity
Detected in all
TTBK2
ENSSSCG00000004718
ENSG00000128881
Tau tubulin kinase 2
Low tissue specificity
Detected in all
TTC13
ENSSSCG00000010180
ENSG00000143643
Tetratricopeptide repeat domain 13
Low tissue specificity
Detected in all
TTC14
ENSSSCG00000011767
ENSG00000163728
Tetratricopeptide repeat domain 14
Low tissue specificity
Detected in all
TTC16
ENSSSCG00000005616
ENSG00000167094
Tetratricopeptide repeat domain 16
Low tissue specificity
Detected in all
TTC17
ENSSSCG00000013284
ENSG00000052841
Tetratricopeptide repeat domain 17
Low tissue specificity
Detected in all
TTC19
ENSSSCG00000023747
ENSG00000011295
Tetratricopeptide repeat domain 19
Low tissue specificity
Detected in all
TTC21A
ENSSSCG00000011263
ENSG00000168026
Tetratricopeptide repeat domain 21A
Tissue enhanced
Detected in all
fallopian tube:
31.1
upper respiratory system:
24.7
TTC21B
ENSSSCG00000015908
ENSG00000123607
Tetratricopeptide repeat domain 21B
Low tissue specificity
Detected in all
TTC23
ENSSSCG00000004813
ENSG00000103852
Tetratricopeptide repeat domain 23
Tissue enhanced
Detected in all
smooth muscle:
81.2
TTC25
ENSSSCG00000017415
ENSG00000204815
Tetratricopeptide repeat domain 25
Low tissue specificity
Detected in all
TTC26
ENSSSCG00000016511
ENSG00000105948
Tetratricopeptide repeat domain 26
Low tissue specificity
Detected in all
TTC27
ENSSSCG00000008512
ENSG00000018699
Tetratricopeptide repeat domain 27
Low tissue specificity
Detected in all
TTC28
ENSSSCG00000009968
ENSG00000100154
Tetratricopeptide repeat domain 28
Low tissue specificity
Detected in all
TTC3
ENSSSCG00000012062
ENSG00000182670
Tetratricopeptide repeat domain 3
Low tissue specificity
Detected in all
TTC31
ENSSSCG00000008275
ENSG00000115282
Tetratricopeptide repeat domain 31
Low tissue specificity
Detected in all
TTC33
ENSSSCG00000034966
ENSG00000113638
Tetratricopeptide repeat domain 33
Low tissue specificity
Detected in all
TTC38
ENSSSCG00000000003
ENSG00000075234
Tetratricopeptide repeat domain 38
Low tissue specificity
Detected in all
TTC39A
ENSSSCG00000003875
ENSG00000085831
Tetratricopeptide repeat domain 39A
Tissue enhanced
Detected in many
male glands:
74.3
TTC39B
ENSSSCG00000005186
ENSG00000155158
Tetratricopeptide repeat domain 39B
Low tissue specificity
Detected in many
TTC39C
ENSSSCG00000003710
ENSG00000168234
Tetratricopeptide repeat domain 39C
Tissue enhanced
Detected in all
liver:
43.1
TTC4
ENSSSCG00000003844
ENSG00000243725
Tetratricopeptide repeat domain 4
Low tissue specificity
Detected in all
TTC5
ENSSSCG00000002145
ENSG00000136319
Tetratricopeptide repeat domain 5
Low tissue specificity
Detected in all
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