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Human disease related genes
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UMAP gene cluster
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Subclass
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Biological process
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TOR1AIP1
ENSSSCG00000032621
ENSG00000143337
Torsin 1A interacting protein 1
Low tissue specificity
Detected in all
TOR1AIP2
ENSSSCG00000035741
ENSG00000169905
Torsin A interacting protein 2
Low tissue specificity
Detected in all
TOR1B
ENSSSCG00000005683
ENSG00000136816
Torsin family 1 member B
Low tissue specificity
Detected in all
TOR2A
ENSSSCG00000005619
ENSG00000160404
Torsin family 2 member A
Low tissue specificity
Detected in all
TOR3A
ENSSSCG00000015525
ENSG00000186283
Torsin family 3 member A
Low tissue specificity
Detected in all
TOR4A
ENSSSCG00000005845
ENSG00000198113
Torsin family 4 member A
Tissue enhanced
Detected in many
stomach:
22.5
TOX
ENSSSCG00000006235
ENSG00000198846
Thymocyte selection associated high mobility group box
Tissue enhanced
Detected in many
lymphoid tissue:
54.8
stomach:
40.2
TOX4
ENSSSCG00000029203
ENSG00000092203
TOX high mobility group box family member 4
Low tissue specificity
Detected in all
TP53
ENSSSCG00000017950
ENSG00000141510
Cellular tumor antigen p53
Low tissue specificity
Detected in all
TP53BP1
ENSSSCG00000031949
ENSG00000067369
Tumor protein p53 binding protein 1
Low tissue specificity
Detected in all
TP53BP2
ENSSSCG00000010894
ENSG00000143514
Tumor protein p53 binding protein 2
Low tissue specificity
Detected in all
TP53I11
ENSSSCG00000031819
ENSG00000175274
Tumor protein p53 inducible protein 11
Low tissue specificity
Detected in many
TP53I13
ENSSSCG00000017788
ENSG00000167543
Tumor protein p53 inducible protein 13
Low tissue specificity
Detected in all
TP53I3
ENSSSCG00000008586
ENSG00000115129
Tumor protein p53 inducible protein 3
Low tissue specificity
Detected in all
TP53INP1
ENSSSCG00000034321
ENSG00000164938
Tumor protein p53 inducible nuclear protein 1
Low tissue specificity
Detected in all
TP53INP2
ENSSSCG00000022099
ENSG00000078804
Tumor protein p53 inducible nuclear protein 2
Tissue enhanced
Detected in many
adrenal gland:
54.2
brain:
119.3
TP53RK
ENSSSCG00000007452
ENSG00000172315
TP53 regulating kinase
Low tissue specificity
Detected in all
TP53TG5
ENSSSCG00000037072
ENSG00000124251
TP53 target 5
Tissue enhanced
Detected in all
testis:
49.7
TPBG
ENSSSCG00000004458
ENSG00000146242
Trophoblast glycoprotein
Tissue enhanced
Detected in many
cornea:
32.7
TPCN1
ENSSSCG00000009879
ENSG00000186815
Two pore segment channel 1
Low tissue specificity
Detected in all
TPCN2
ENSSSCG00000012875
ENSG00000162341
Two pore segment channel 2
Tissue enriched
Detected in all
kidney:
79.8
TPGS1
ENSSSCG00000036434
ENSG00000141933
Tubulin polyglutamylase complex subunit 1
Low tissue specificity
Detected in all
TPI1
ENSSSCG00000000685
ENSG00000111669
Triosephosphate isomerase
Tissue enhanced
Detected in all
lens:
150.6
skeletal muscle:
254.6
TPK1
ENSSSCG00000015462
ENSG00000196511
Thiamin pyrophosphokinase 1
Low tissue specificity
Detected in all
TPM1
ENSSSCG00000004570
ENSG00000140416
Tropomyosin alpha-1 chain
Tissue enhanced
Detected in all
skeletal muscle:
406.8
smooth muscle:
225.2
TPM2
ENSSSCG00000005316
ENSG00000198467
Tropomyosin beta chain
Tissue enriched
Detected in many
skeletal muscle:
765.9
TPM3
ENSSSCG00000006556
ENSG00000143549
Tropomyosin alpha-3 chain
Tissue enriched
Detected in all
skeletal muscle:
273.0
TPM4
ENSSSCG00000013849
ENSG00000167460
Tropomyosin alpha-4 chain
Low tissue specificity
Detected in all
TPMT
ENSSSCG00000001073
ENSG00000137364
Thiopurine S-methyltransferase
Tissue enhanced
Detected in many
pineal gland:
22.5
TPP1
ENSSSCG00000023080
ENSG00000166340
Tripeptidyl peptidase 1
Low tissue specificity
Detected in all
TPP2
ENSSSCG00000009528
ENSG00000134900
Tripeptidyl peptidase 2
Low tissue specificity
Detected in all
TPPP3
ENSSSCG00000035983
ENSG00000159713
Tubulin polymerization promoting protein family member 3
Low tissue specificity
Detected in all
TPR
ENSSSCG00000015576
ENSG00000047410
Translocated promoter region, nuclear basket protein
Low tissue specificity
Detected in all
TPRA1
ENSSSCG00000011623
ENSG00000163870
Transmembrane protein adipocyte associated 1
Low tissue specificity
Detected in all
TPRG1
ENSSSCG00000011812
ENSG00000188001
Tumor protein p63 regulated 1
Tissue enhanced
Detected in some
mouth:
17.2
skin:
30.1
TPRG1L
ENSSSCG00000003359
ENSG00000158109
Tumor protein p63-regulated gene 1-like protein isoform 1
Low tissue specificity
Detected in all
TPRKB
ENSSSCG00000008297
ENSG00000144034
EKC/KEOPS complex subunit TPRKB
Low tissue specificity
Detected in all
TPRN
ENSSSCG00000036027
ENSG00000176058
Taperin
Tissue enhanced
Detected in all
stomach:
34.0
TPST1
ENSSSCG00000007737
ENSG00000169902
Protein-tyrosine sulfotransferase 1
Low tissue specificity
Detected in all
TPST2
ENSSSCG00000009963
ENSG00000128294
Protein-tyrosine sulfotransferase 2 precursor
Low tissue specificity
Detected in all
TPT1
ENSSSCG00000040929
ENSG00000133112
Translationally-controlled tumor protein
Tissue enhanced
Detected in all
male glands:
510.3
TPX2
ENSSSCG00000007235
ENSG00000088325
TPX2, microtubule nucleation factor
Tissue enhanced
Detected in all
lymphoid tissue:
45.9
testis:
34.7
TRA2A
ENSSSCG00000015387
ENSG00000164548
Transformer-2 protein homolog alpha
Low tissue specificity
Detected in all
TRA2B
ENSSSCG00000030225
ENSG00000136527
Transformer-2 protein homolog beta
Low tissue specificity
Detected in all
TRABD
ENSSSCG00000000974
ENSG00000170638
TraB domain containing
Low tissue specificity
Detected in all
TRABD2B
ENSSSCG00000037318
ENSG00000269113
TraB domain containing 2B
Tissue enhanced
Detected in many
adipose tissue:
18.4
cartilage:
37.9
TRADD
ENSSSCG00000036321
ENSG00000102871
TNFRSF1A associated via death domain
Low tissue specificity
Detected in all
TRAF1
ENSSSCG00000005511
ENSG00000056558
TNF receptor associated factor 1
Tissue enhanced
Detected in all
lymphoid tissue:
28.7
stomach:
28.5
TRAF2
ENSSSCG00000005838
ENSG00000127191
TNF receptor associated factor 2
Low tissue specificity
Detected in all
TRAF3
ENSSSCG00000002525
ENSG00000131323
TNF receptor associated factor 3
Low tissue specificity
Detected in all
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