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Human disease related genes
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UMAP gene cluster
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Subclass
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TIMM29
ENSSSCG00000013635
ENSG00000142444
Translocase of inner mitochondrial membrane 29
Low tissue specificity
Detected in all
TIMM44
ENSSSCG00000013591
ENSG00000104980
Translocase of inner mitochondrial membrane 44
Low tissue specificity
Detected in all
TIMM50
ENSSSCG00000026612
ENSG00000105197
Translocase of inner mitochondrial membrane 50
Low tissue specificity
Detected in all
TIMM8A
ENSSSCG00000012494
ENSG00000126953
Translocase of inner mitochondrial membrane 8A
Low tissue specificity
Detected in all
TIMM8B
ENSSSCG00000023599
ENSG00000150779
Translocase of inner mitochondrial membrane 8 homolog B
Tissue enhanced
Detected in all
lens:
48.8
TIMM9
ENSSSCG00000027270
ENSG00000100575
Translocase of inner mitochondrial membrane 9
Low tissue specificity
Detected in all
TIMMDC1
ENSSSCG00000037639
ENSG00000113845
Translocase of inner mitochondrial membrane domain containing 1
Low tissue specificity
Detected in all
TIMP1
ENSSSCG00000012277
ENSG00000102265
Metalloproteinase inhibitor 1 precursor
Tissue enriched
Detected in many
ovary:
718.4
TIMP2
ENSSSCG00000017164
ENSG00000035862
Metalloproteinase inhibitor 2 precursor
Low tissue specificity
Detected in all
TIMP3
ENSSSCG00000031866
ENSG00000100234
TIMP metallopeptidase inhibitor 3
Low tissue specificity
Detected in all
TIMP4
ENSSSCG00000033000
ENSG00000157150
TIMP metallopeptidase inhibitor 4
Group enriched
Detected in many
adipose tissue:
32.1
brain:
42.7
TINAG
ENSSSCG00000001484
ENSG00000137251
Tubulointerstitial nephritis antigen
Tissue enriched
Detected in many
kidney:
119.3
TINAGL1
ENSSSCG00000003600
ENSG00000142910
Tubulointerstitial nephritis antigen like 1
Low tissue specificity
Detected in many
TINF2
ENSSSCG00000001994
ENSG00000092330
TERF1 interacting nuclear factor 2
Low tissue specificity
Detected in all
TIPARP
ENSSSCG00000027646
ENSG00000163659
TCDD inducible poly(ADP-ribose) polymerase
Low tissue specificity
Detected in all
TIPIN
ENSSSCG00000004942
ENSG00000075131
TIMELESS interacting protein
Low tissue specificity
Detected in all
TIPRL
ENSSSCG00000006301
ENSG00000143155
TOR signaling pathway regulator
Low tissue specificity
Detected in all
TIRAP
ENSSSCG00000022413
ENSG00000150455
TIR domain containing adaptor protein
Low tissue specificity
Detected in all
TJAP1
ENSSSCG00000001688
ENSG00000137221
Tight junction associated protein 1
Low tissue specificity
Detected in all
TK1
ENSSSCG00000037120
ENSG00000167900
Thymidine kinase 1
Tissue enhanced
Detected in many
lymphoid tissue:
25.5
TK2
ENSSSCG00000038053
ENSG00000166548
Thymidine kinase 2, mitochondrial
Low tissue specificity
Detected in all
TKFC
ENSSSCG00000013087
ENSG00000149476
Triokinase and FMN cyclase
Tissue enhanced
Detected in all
kidney:
38.7
liver:
42.9
TKT
ENSSSCG00000021408
ENSG00000163931
Transketolase
Tissue enhanced
Detected in all
cornea:
113.9
TLCD1
ENSSSCG00000038650
ENSG00000160606
TLC domain containing 1
Low tissue specificity
Detected in all
TLCD2
ENSSSCG00000040205
ENSG00000185561
TLC domain containing 2
Tissue enhanced
Detected in all
brain:
20.7
kidney:
19.1
TLDC1
ENSSSCG00000002672
ENSG00000140950
TBC/LysM-associated domain containing 1
Tissue enhanced
Detected in all
esophagus:
25.5
male glands:
33.4
TLDC2
ENSSSCG00000031690
ENSG00000101342
TBC/LysM-associated domain containing 2
Tissue enhanced
Detected in many
large intestine:
19.1
small intestine:
28.5
TLE1
ENSSSCG00000005291
ENSG00000196781
Transducin like enhancer of split 1
Low tissue specificity
Detected in all
TLE2
ENSSSCG00000028995
ENSG00000065717
Transducin like enhancer of split 2
Tissue enhanced
Detected in many
male glands:
43.4
TLE3
ENSSSCG00000004971
ENSG00000140332
Transducin like enhancer of split 3
Low tissue specificity
Detected in all
TLE4
ENSSSCG00000005288
ENSG00000106829
Transducin like enhancer of split 4
Low tissue specificity
Detected in all
TLK1
ENSSSCG00000015944
ENSG00000198586
Tousled like kinase 1
Low tissue specificity
Detected in all
TLK2
ENSSSCG00000017301
ENSG00000146872
Tousled like kinase 2
Low tissue specificity
Detected in all
TLL1
ENSSSCG00000008853
ENSG00000038295
Tolloid like 1
Tissue enhanced
Detected in many
brain:
53.6
synovial tissue:
21.0
TLL2
ENSSSCG00000010507
ENSG00000095587
Tolloid like 2
Tissue enhanced
Detected in many
brain:
16.1
TLN1
ENSSSCG00000005317
ENSG00000137076
Talin 1
Low tissue specificity
Detected in all
TLN2
ENSSSCG00000024088
ENSG00000171914
Talin 2
Low tissue specificity
Detected in all
TLNRD1
ENSSSCG00000037209
ENSG00000140406
Mesoderm development candidate 1
Low tissue specificity
Detected in all
TLR1
ENSSSCG00000026583
ENSG00000174125
Toll-like receptor 1 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
26.3
TLR10
ENSSSCG00000027877
ENSG00000174123
Toll-like receptor 10
Tissue enhanced
Detected in all
lymphoid tissue:
21.6
TLR2
ENSSSCG00000009002
ENSG00000137462
Toll-like receptor 2 precursor
Low tissue specificity
Detected in all
TLR3
ENSSSCG00000015801
ENSG00000164342
Toll-like receptor 3 precursor
Low tissue specificity
Detected in all
TLR4
ENSSSCG00000005503
ENSG00000136869
Toll-like receptor 4 isoform 1 precursor
Tissue enhanced
Detected in many
male glands:
40.1
TLR6
ENSSSCG00000026592
ENSG00000174130
Toll like receptor 6
Low tissue specificity
Detected in many
TLR7
ENSSSCG00000012117
ENSG00000196664
Toll like receptor 7
Low tissue specificity
Detected in many
TLR8
ENSSSCG00000012118
ENSG00000101916
Toll-like receptor 8 precursor
Tissue enriched
Detected in all
lymphoid tissue:
42.9
TM2D1
ENSSSCG00000038861
ENSG00000162604
TM2 domain containing 1
Low tissue specificity
Detected in all
TM2D2
ENSSSCG00000028592
ENSG00000169490
TM2 domain-containing protein 2 precursor
Low tissue specificity
Detected in all
TM2D3
ENSSSCG00000005782
ENSG00000184277
TM2 domain containing 3
Low tissue specificity
Detected in all
TM4SF1
ENSSSCG00000033018
ENSG00000169908
Transmembrane 4 L six family member 1
Low tissue specificity
Detected in many
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