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UMAP gene cluster
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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TEX22
ENSSSCG00000036444
ENSG00000226174
Testis expressed 22
Tissue enhanced
Detected in many
testis:
27.0
TEX26
ENSSSCG00000009332
ENSG00000175664
Testis expressed 26
Tissue enhanced
Detected in many
fallopian tube:
24.6
mesothelial tissue:
20.7
testis:
45.8
TEX264
ENSSSCG00000011424
ENSG00000164081
Testis expressed 264
Low tissue specificity
Detected in all
TEX30
ENSSSCG00000009531
ENSG00000151287
Testis expressed 30
Tissue enriched
Detected in all
testis:
33.9
TEX36
ENSSSCG00000032832
ENSG00000175018
Testis expressed 36
Low tissue specificity
Detected in all
TEX9
ENSSSCG00000004602
ENSG00000151575
Testis-expressed sequence 9 protein
Tissue enhanced
Detected in all
skeletal muscle:
82.2
TFAM
ENSSSCG00000040185
ENSG00000108064
Transcription factor A, mitochondrial
Low tissue specificity
Detected in all
TFAP2B
ENSSSCG00000025535
ENSG00000008196
Transcription factor AP-2-beta
Group enriched
Detected in many
breast:
49.4
epididymis:
82.5
TFAP4
ENSSSCG00000040215
ENSG00000090447
Transcription factor AP-4
Low tissue specificity
Detected in all
TFB1M
ENSSSCG00000024361
ENSG00000029639
Dimethyladenosine transferase 1, mitochondrial
Low tissue specificity
Detected in all
TFB2M
ENSSSCG00000023775
ENSG00000162851
Transcription factor B2, mitochondrial
Low tissue specificity
Detected in all
TFCP2
ENSSSCG00000031206
ENSG00000135457
Transcription factor CP2
Low tissue specificity
Detected in all
TFDP2
ENSSSCG00000037647
ENSG00000114126
Transcription factor Dp-2
Tissue enhanced
Detected in all
lymphoid tissue:
47.7
TFE3
ENSSSCG00000012287
ENSG00000068323
Transcription factor binding to IGHM enhancer 3
Low tissue specificity
Detected in all
TFEB
ENSSSCG00000001621
ENSG00000112561
Transcription factor EB
Low tissue specificity
Detected in all
TFEC
ENSSSCG00000038138
ENSG00000105967
Transcription factor EC
Tissue enhanced
Detected in many
kidney:
29.7
lymphoid tissue:
40.3
TFG
ENSSSCG00000011961
ENSG00000114354
TRK-fused gene
Low tissue specificity
Detected in all
TFIP11
ENSSSCG00000009962
ENSG00000100109
Tuftelin-interacting protein 11
Low tissue specificity
Detected in all
TFPI
ENSSSCG00000016032
ENSG00000003436
Tissue factor pathway inhibitor precursor
Tissue enhanced
Detected in many
skeletal muscle:
8.9
skin:
12.0
TFPI2
ENSSSCG00000015322
ENSG00000105825
Tissue factor pathway inhibitor 2
Tissue enhanced
Detected in many
adipose tissue:
67.0
ovary:
75.3
TFPT
ENSSSCG00000003262
ENSG00000105619
TCF3 fusion partner
Low tissue specificity
Detected in all
TFRC
ENSSSCG00000011848
ENSG00000072274
Transferrin receptor protein 1
Low tissue specificity
Detected in all
TGDS
ENSSSCG00000009491
ENSG00000088451
TDP-glucose 4,6-dehydratase
Low tissue specificity
Detected in all
TGFA
ENSSSCG00000008326
ENSG00000163235
Protransforming growth factor alpha precursor
Group enriched
Detected in all
cartilage:
102.5
ovary:
30.9
TGFB1
ENSSSCG00000003017
ENSG00000105329
Transforming growth factor beta-1 precursor
Low tissue specificity
Detected in all
TGFB1I1
ENSSSCG00000035952
ENSG00000140682
Transforming growth factor beta 1 induced transcript 1
Tissue enhanced
Detected in many
cervix:
62.0
smooth muscle:
86.2
TGFB2
ENSSSCG00000010816
ENSG00000092969
Transforming growth factor beta 2
Tissue enhanced
Detected in all
choroid plexus:
100.6
TGFB3
ENSSSCG00000002385
ENSG00000119699
Transforming growth factor beta-3 precursor
Tissue enhanced
Detected in many
cartilage:
37.8
penis:
51.2
TGFBI
ENSSSCG00000014316
ENSG00000120708
Transforming growth factor beta induced
Tissue enhanced
Detected in many
cartilage:
147.5
cornea:
213.4
TGFBR1
ENSSSCG00000005382
ENSG00000106799
TGF-beta receptor type-1 precursor
Low tissue specificity
Detected in all
TGFBR2
ENSSSCG00000011226
ENSG00000163513
Transforming growth factor beta receptor 2
Tissue enhanced
Detected in many
cartilage:
107.0
TGFBR3
ENSSSCG00000006911
ENSG00000069702
Transforming growth factor beta receptor type 3 precursor
Low tissue specificity
Detected in all
TGFBRAP1
ENSSSCG00000024636
ENSG00000135966
Transforming growth factor beta receptor associated protein 1
Low tissue specificity
Detected in all
TGIF1
ENSSSCG00000024174
ENSG00000177426
Homeobox protein TGIF1 isoform c
Low tissue specificity
Detected in many
TGIF2
ENSSSCG00000036002
ENSG00000118707
TGFB induced factor homeobox 2
Low tissue specificity
Detected in all
TGIF2-C20orf24
ENSSSCG00000039201
ENSG00000259399
TGIF2-C20orf24 readthrough
Low tissue specificity
Detected in all
TGM2
ENSSSCG00000023522
ENSG00000198959
Transglutaminase 2
Low tissue specificity
Detected in many
TGM3
ENSSSCG00000026043
ENSG00000125780
Transglutaminase 3
Tissue enriched
Detected in some
stomach:
124.6
TGS1
ENSSSCG00000006251
ENSG00000137574
Trimethylguanosine synthase 1
Low tissue specificity
Detected in all
THADA
ENSSSCG00000008459
ENSG00000115970
THADA, armadillo repeat containing
Low tissue specificity
Detected in all
THAP1
ENSSSCG00000039969
ENSG00000131931
THAP domain containing 1
Low tissue specificity
Detected in all
THAP11
ENSSSCG00000002769
ENSG00000168286
THAP domain-containing protein 11
Low tissue specificity
Detected in all
THAP2
ENSSSCG00000021270
ENSG00000173451
THAP domain containing 2
Low tissue specificity
Detected in all
THAP3
ENSSSCG00000036876
ENSG00000041988
THAP domain containing 3
Low tissue specificity
Detected in all
THAP4
ENSSSCG00000016374
ENSG00000176946
THAP domain containing 4
Low tissue specificity
Detected in all
THAP5
ENSSSCG00000038158
ENSG00000177683
THAP domain containing 5
Low tissue specificity
Detected in all
THAP6
ENSSSCG00000029348
ENSG00000174796
THAP domain containing 6
Tissue enhanced
Detected in all
lens:
36.5
THAP7
ENSSSCG00000033301
ENSG00000184436
THAP domain containing 7
Low tissue specificity
Detected in all
THAP9
ENSSSCG00000009243
ENSG00000168152
THAP domain containing 9
Low tissue specificity
Detected in all
THBD
ENSSSCG00000007115
ENSG00000178726
Thrombomodulin precursor
Tissue enhanced
Detected in many
mesothelial tissue:
74.0
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