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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
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12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TAB2
ENSSSCG00000004110
ENSG00000055208
TGF-beta activated kinase 1/MAP3K7 binding protein 2
Low tissue specificity
Detected in all
TAB3
ENSSSCG00000012203
ENSG00000157625
TGF-beta activated kinase 1 and MAP3K7 binding protein 3
Low tissue specificity
Detected in all
TAC4
ENSSSCG00000038057
ENSG00000176358
Tachykinin-4 precursor
Tissue enhanced
Detected in all
esophagus:
29.1
salivary gland:
42.8
upper respiratory system:
25.8
TACC2
ENSSSCG00000028063
ENSG00000138162
Transforming acidic coiled-coil-containing protein 2
Tissue enhanced
Detected in all
lens:
113.9
TACC3
ENSSSCG00000008677
ENSG00000013810
Transforming acidic coiled-coil containing protein 3
Tissue enhanced
Detected in all
lymphoid tissue:
28.4
stomach:
29.7
testis:
35.4
TACO1
ENSSSCG00000036944
ENSG00000136463
Translational activator of cytochrome c oxidase 1
Low tissue specificity
Detected in all
TACR2
ENSSSCG00000010254
ENSG00000075073
Tachykinin receptor 2
Tissue enriched
Detected in all
smooth muscle:
52.1
TACR3
ENSSSCG00000009160
ENSG00000169836
Tachykinin receptor 3
Tissue enhanced
Detected in many
fallopian tube:
25.0
ovary:
10.9
pituitary gland:
11.8
TADA1
ENSSSCG00000006318
ENSG00000152382
Transcriptional adaptor 1
Low tissue specificity
Detected in all
TADA2A
ENSSSCG00000025775
ENSG00000276234
Transcriptional adaptor 2A
Low tissue specificity
Detected in all
TADA2B
ENSSSCG00000029624
ENSG00000173011
Transcriptional adaptor 2B
Low tissue specificity
Detected in all
TADA3
ENSSSCG00000011551
ENSG00000171148
Transcriptional adapter 3
Low tissue specificity
Detected in all
TAF11
ENSSSCG00000001533
ENSG00000064995
Transcription initiation factor TFIID subunit 11
Low tissue specificity
Detected in all
TAF12
ENSSSCG00000027530
ENSG00000120656
TATA-box binding protein associated factor 12
Low tissue specificity
Detected in all
TAF13
ENSSSCG00000020842
ENSG00000197780
Transcription initiation factor TFIID subunit 13
Low tissue specificity
Detected in all
TAF15
ENSSSCG00000017707
ENSG00000270647
TATA-binding protein-associated factor 2N
Low tissue specificity
Detected in all
TAF1A
ENSSSCG00000010833
ENSG00000143498
TATA-box binding protein associated factor, RNA polymerase I subunit A
Low tissue specificity
Detected in all
TAF1B
ENSSSCG00000008637
ENSG00000115750
TATA-box binding protein associated factor, RNA polymerase I subunit B
Low tissue specificity
Detected in all
TAF1C
ENSSSCG00000002680
ENSG00000103168
TATA-box binding protein associated factor, RNA polymerase I subunit C
Low tissue specificity
Detected in all
TAF1D
ENSSSCG00000038682
ENSG00000166012
TATA-box binding protein associated factor, RNA polymerase I subunit D
Low tissue specificity
Detected in all
TAF2
ENSSSCG00000006000
ENSG00000064313
TATA-box binding protein associated factor 2
Low tissue specificity
Detected in all
TAF3
ENSSSCG00000011127
ENSG00000165632
TATA-box binding protein associated factor 3
Low tissue specificity
Detected in all
TAF4
ENSSSCG00000024694
ENSG00000130699
TATA-box binding protein associated factor 4
Low tissue specificity
Detected in all
TAF4B
ENSSSCG00000003718
ENSG00000141384
TATA-box binding protein associated factor 4b
Low tissue specificity
Detected in all
TAF5
ENSSSCG00000010597
ENSG00000148835
TATA-box binding protein associated factor 5
Low tissue specificity
Detected in all
TAF5L
ENSSSCG00000010187
ENSG00000135801
TATA-box binding protein associated factor 5 like
Low tissue specificity
Detected in all
TAF6
ENSSSCG00000034153
ENSG00000106290
TATA-box binding protein associated factor 6
Low tissue specificity
Detected in all
TAF6L
ENSSSCG00000020665
ENSG00000162227
TATA-box binding protein associated factor 6 like
Low tissue specificity
Detected in all
TAF7
ENSSSCG00000028168
ENSG00000178913
TATA-box binding protein associated factor 7
Low tissue specificity
Detected in all
TAF8
ENSSSCG00000022224
ENSG00000137413
TATA-box binding protein associated factor 8
Low tissue specificity
Detected in all
TAF9
ENSSSCG00000038615
ENSG00000273841
TATA-box binding protein associated factor 9
Low tissue specificity
Detected in all
TAF9B
ENSSSCG00000026714
ENSG00000187325
TATA-box binding protein associated factor 9b
Low tissue specificity
Detected in all
TAGAP
ENSSSCG00000004053
ENSG00000164691
T-cell activation Rho GTPase-activating protein
Low tissue specificity
Detected in all
TAGLN
ENSSSCG00000015073
ENSG00000149591
Transgelin
Tissue enhanced
Detected in many
smooth muscle:
633.1
TAL1
ENSSSCG00000035847
ENSG00000162367
TAL bHLH transcription factor 1, erythroid differentiation factor
Tissue enhanced
Detected in many
mesothelial tissue:
33.6
TALDO1
ENSSSCG00000012847
ENSG00000177156
Transaldolase
Low tissue specificity
Detected in all
TAMM41
ENSSSCG00000011578
ENSG00000144559
TAM41 mitochondrial translocator assembly and maintenance homolog
Low tissue specificity
Detected in all
TANC1
ENSSSCG00000015880
ENSG00000115183
Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
Low tissue specificity
Detected in all
TANC2
ENSSSCG00000017298
ENSG00000170921
Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
Low tissue specificity
Detected in many
TANGO2
ENSSSCG00000010134
ENSG00000183597
Transport and golgi organization 2 homolog
Tissue enhanced
Detected in all
lens:
67.3
TANGO6
ENSSSCG00000031767
ENSG00000103047
Transport and golgi organization 6 homolog
Low tissue specificity
Detected in all
TANK
ENSSSCG00000015889
ENSG00000136560
TRAF family member associated NFKB activator
Low tissue specificity
Detected in all
TAOK1
ENSSSCG00000017790
ENSG00000160551
TAO kinase 1
Low tissue specificity
Detected in all
TAOK2
ENSSSCG00000031967
ENSG00000149930
TAO kinase 2
Low tissue specificity
Detected in all
TAOK3
ENSSSCG00000009850
ENSG00000135090
TAO kinase 3
Low tissue specificity
Detected in all
TAP1
ENSSSCG00000025618
ENSG00000168394
Antigen peptide transporter 1
Tissue enhanced
Detected in many
large intestine:
38.1
stomach:
49.4
TAPBP
ENSSSCG00000001507
ENSG00000231925
TAP binding protein
Low tissue specificity
Detected in all
TAPBPL
ENSSSCG00000000704
ENSG00000139192
TAP binding protein like
Low tissue specificity
Detected in all
TAPT1
ENSSSCG00000021828
ENSG00000169762
Transmembrane anterior posterior transformation 1
Low tissue specificity
Detected in all
TARBP1
ENSSSCG00000010160
ENSG00000059588
TAR (HIV-1) RNA binding protein 1
Low tissue specificity
Detected in all
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