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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SESN3
ENSSSCG00000037015
ENSG00000149212
Sestrin 3
Tissue enriched
Detected in all
lens:
145.8
SESTD1
ENSSSCG00000016005
ENSG00000187231
SEC14 and spectrin domain containing 1
Low tissue specificity
Detected in all
SETBP1
ENSSSCG00000004490
ENSG00000152217
SET binding protein 1
Low tissue specificity
Detected in all
SETD1A
ENSSSCG00000007782
ENSG00000099381
SET domain containing 1A
Low tissue specificity
Detected in all
SETD1B
ENSSSCG00000009806
ENSG00000139718
SET domain containing 1B
Low tissue specificity
Detected in all
SETD2
ENSSSCG00000011332
ENSG00000181555
SET domain containing 2
Low tissue specificity
Detected in all
SETD3
ENSSSCG00000002508
ENSG00000183576
SET domain containing 3
Low tissue specificity
Detected in all
SETD4
ENSSSCG00000028883
ENSG00000185917
SET domain containing 4
Low tissue specificity
Detected in all
SETD5
ENSSSCG00000011540
ENSG00000168137
SET domain containing 5
Low tissue specificity
Detected in all
SETD6
ENSSSCG00000026505
ENSG00000103037
SET domain containing 6
Low tissue specificity
Detected in all
SETD7
ENSSSCG00000030396
ENSG00000145391
SET domain containing lysine methyltransferase 7
Low tissue specificity
Detected in all
SETD9
ENSSSCG00000016919
ENSG00000155542
SET domain containing 9
Low tissue specificity
Detected in all
SETDB1
ENSSSCG00000006645
ENSG00000143379
SET domain bifurcated 1
Low tissue specificity
Detected in all
SETDB2
ENSSSCG00000009395
ENSG00000136169
SET domain bifurcated 2
Low tissue specificity
Detected in all
SETX
ENSSSCG00000005724
ENSG00000107290
Senataxin
Tissue enhanced
Detected in all
testis:
61.5
SF1
ENSSSCG00000013021
ENSG00000168066
Splicing factor 1
Low tissue specificity
Detected in all
SF3A1
ENSSSCG00000010002
ENSG00000099995
Splicing factor 3a subunit 1
Low tissue specificity
Detected in all
SF3A2
ENSSSCG00000039757
ENSG00000104897
Splicing factor 3a subunit 2
Low tissue specificity
Detected in all
SF3A3
ENSSSCG00000003643
ENSG00000183431
Splicing factor 3a subunit 3
Low tissue specificity
Detected in all
SF3B1
ENSSSCG00000016075
ENSG00000115524
Splicing factor 3b subunit 1
Low tissue specificity
Detected in all
SF3B2
ENSSSCG00000012957
ENSG00000087365
Splicing factor 3b subunit 2
Low tissue specificity
Detected in all
SF3B3
ENSSSCG00000025323
ENSG00000189091
Splicing factor 3b subunit 3
Low tissue specificity
Detected in all
SF3B5
ENSSSCG00000035578
ENSG00000169976
Splicing factor 3b subunit 5
Low tissue specificity
Detected in all
SF3B6
ENSSSCG00000008587
ENSG00000115128
Splicing factor 3b subunit 6
Low tissue specificity
Detected in all
SFMBT1
ENSSSCG00000011454
ENSG00000163935
Scm like with four mbt domains 1
Low tissue specificity
Detected in all
SFMBT2
ENSSSCG00000024480
ENSG00000198879
Scm like with four mbt domains 2
Tissue enhanced
Detected in all
adrenal gland:
55.4
SFPQ
ENSSSCG00000035690
ENSG00000116560
Splicing factor proline and glutamine rich
Low tissue specificity
Detected in all
SFR1
ENSSSCG00000010608
ENSG00000156384
SWI5 dependent homologous recombination repair protein 1
Tissue enhanced
Detected in many
testis:
20.4
SFRP1
ENSSSCG00000025822
ENSG00000104332
Secreted frizzled related protein 1
Tissue enhanced
Detected in many
choroid plexus:
166.0
SFRP2
ENSSSCG00000009004
ENSG00000145423
Secreted frizzled-related protein 2 precursor
Tissue enhanced
Detected in many
dura mater:
179.5
retina:
111.4
SFRP4
ENSSSCG00000035299
ENSG00000106483
Secreted frizzled-related protein 4 precursor
Tissue enhanced
Detected in many
dura mater:
134.2
upper respiratory system:
41.4
vagus nerve:
48.3
SFRP5
ENSSSCG00000010529
ENSG00000120057
Secreted frizzled-related protein 5 precursor
Tissue enhanced
Detected in many
adipose tissue:
50.7
choroid plexus:
112.8
vagus nerve:
88.5
SFSWAP
ENSSSCG00000009744
ENSG00000061936
Splicing factor SWAP
Low tissue specificity
Detected in all
SFT2D1
ENSSSCG00000004020
ENSG00000198818
Vesicle transport protein SFT2A
Low tissue specificity
Detected in all
SFT2D2
ENSSSCG00000031617
ENSG00000213064
Vesicle transport protein SFT2B
Tissue enhanced
Detected in all
lens:
45.3
SFT2D3
ENSSSCG00000015860
ENSG00000173349
SFT2 domain containing 3
Low tissue specificity
Detected in all
SFTPD
ENSSSCG00000010334
ENSG00000133661
Pulmonary surfactant-associated protein D
Tissue enriched
Detected in many
lung:
66.8
SFXN1
ENSSSCG00000014063
ENSG00000164466
Sideroflexin-1
Low tissue specificity
Detected in all
SFXN2
ENSSSCG00000010589
ENSG00000156398
Sideroflexin 2
Tissue enhanced
Detected in all
kidney:
28.3
male glands:
35.3
SFXN3
ENSSSCG00000022005
ENSG00000107819
Sideroflexin 3
Low tissue specificity
Detected in all
SFXN4
ENSSSCG00000010681
ENSG00000183605
Sideroflexin 4
Low tissue specificity
Detected in all
SFXN5
ENSSSCG00000008307
ENSG00000144040
Sideroflexin 5
Tissue enriched
Detected in many
brain:
39.0
SGCA
ENSSSCG00000017583
ENSG00000108823
Alpha-sarcoglycan precursor
Tissue enhanced
Detected in all
skeletal muscle:
50.7
SGCB
ENSSSCG00000008833
ENSG00000163069
Beta-sarcoglycan
Low tissue specificity
Detected in all
SGCE
ENSSSCG00000015328
ENSG00000127990
Epsilon-sarcoglycan
Low tissue specificity
Detected in all
SGCG
ENSSSCG00000009281
ENSG00000102683
Sarcoglycan gamma
Tissue enhanced
Detected in many
cartilage:
26.2
heart:
33.0
skeletal muscle:
47.2
SGF29
ENSSSCG00000022778
ENSG00000176476
SAGA complex associated factor 29
Tissue enhanced
Detected in all
testis:
70.2
SGIP1
ENSSSCG00000025243
ENSG00000118473
SH3 domain GRB2 like endophilin interacting protein 1
Tissue enhanced
Detected in many
brain:
34.6
pineal gland:
21.7
retina:
74.1
SGK1
ENSSSCG00000021443
ENSG00000118515
Serine/threonine-protein kinase Sgk1
Tissue enhanced
Detected in all
choroid plexus:
79.9
SGK3
ENSSSCG00000006206
ENSG00000104205
Serum/glucocorticoid regulated kinase family member 3
Tissue enhanced
Detected in all
choroid plexus:
38.0
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