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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RSPO3
ENSSSCG00000004218
ENSG00000146374
R-spondin-3 precursor
Tissue enhanced
Detected in many
ductus deferens:
44.6
dura mater:
45.6
RSPRY1
ENSSSCG00000002820
ENSG00000159579
Ring finger and SPRY domain containing 1
Low tissue specificity
Detected in all
RSRC1
ENSSSCG00000027556
ENSG00000174891
Arginine and serine rich coiled-coil 1
Low tissue specificity
Detected in all
RSRC2
ENSSSCG00000009791
ENSG00000111011
Arginine and serine rich coiled-coil 2
Low tissue specificity
Detected in all
RSRP1
ENSSSCG00000034449
ENSG00000117616
Arginine/serine-rich protein 1
Low tissue specificity
Detected in all
RTCA
ENSSSCG00000006865
ENSG00000137996
RNA 3'-terminal phosphate cyclase
Tissue enhanced
Detected in all
lens:
49.9
RTCB
ENSSSCG00000000158
ENSG00000100220
TRNA-splicing ligase RtcB homolog
Low tissue specificity
Detected in all
RTF1
ENSSSCG00000004747
ENSG00000137815
RTF1 homolog, Paf1/RNA polymerase II complex component
Low tissue specificity
Detected in all
RTF2
ENSSSCG00000007496
ENSG00000022277
Protein RTF2 homolog
Low tissue specificity
Detected in all
RTKN
ENSSSCG00000008281
ENSG00000114993
Rhotekin
Tissue enhanced
Detected in many
brain:
53.4
vagus nerve:
52.5
RTKN2
ENSSSCG00000039707
ENSG00000182010
Rhotekin 2
Tissue enhanced
Detected in many
lung:
27.1
lymphoid tissue:
22.1
testis:
13.9
RTL5
ENSSSCG00000020876
ENSG00000242732
Retrotransposon Gag like 5
Group enriched
Detected in many
ductus deferens:
69.6
epididymis:
127.0
male glands:
72.3
RTL6
ENSSSCG00000000022
ENSG00000188636
Retrotransposon Gag like 6
Low tissue specificity
Detected in all
RTL9
ENSSSCG00000027981
ENSG00000243978
Retrotransposon Gag like 9
Low tissue specificity
Detected in all
RTN2
ENSSSCG00000036870
ENSG00000125744
Reticulon-2
Tissue enhanced
Detected in all
retina:
27.6
skeletal muscle:
79.7
RTN4
ENSSSCG00000032007
ENSG00000115310
Reticulon-4
Low tissue specificity
Detected in all
RTN4IP1
ENSSSCG00000004373
ENSG00000130347
Reticulon 4 interacting protein 1
Low tissue specificity
Detected in all
RTN4RL1
ENSSSCG00000039780
ENSG00000185924
Reticulon 4 receptor like 1
Low tissue specificity
Detected in many
RTN4RL2
ENSSSCG00000040919
ENSG00000186907
Reticulon 4 receptor like 2
Low tissue specificity
Detected in all
RTRAF
ENSSSCG00000005029
ENSG00000087302
UPF0568 protein C14orf166 homolog
Low tissue specificity
Detected in all
RTTN
ENSSSCG00000032574
ENSG00000176225
Rotatin
Tissue enhanced
Detected in all
male glands:
45.4
RUBCN
ENSSSCG00000011853
ENSG00000145016
Run domain Beclin-1-interacting and cysteine-rich domain-containing protein
Low tissue specificity
Detected in all
RUBCNL
ENSSSCG00000009410
ENSG00000102445
RUN and cysteine rich domain containing beclin 1 interacting protein like
Low tissue specificity
Detected in all
RUFY1
ENSSSCG00000014023
ENSG00000176783
RUN and FYVE domain containing 1
Low tissue specificity
Detected in all
RUFY2
ENSSSCG00000010239
ENSG00000204130
RUN and FYVE domain containing 2
Low tissue specificity
Detected in all
RUFY3
ENSSSCG00000025514
ENSG00000018189
RUN and FYVE domain containing 3
Low tissue specificity
Detected in all
RUFY4
ENSSSCG00000016182
ENSG00000188282
RUN and FYVE domain containing 4
Low tissue specificity
Detected in all
RUNDC1
ENSSSCG00000035057
ENSG00000198863
RUN domain containing 1
Low tissue specificity
Detected in all
RUNDC3B
ENSSSCG00000024485
ENSG00000105784
RUN domain containing 3B
Tissue enhanced
Detected in many
brain:
43.9
lens:
18.3
RUNX1
ENSSSCG00000035537
ENSG00000159216
Runt-related transcription factor 1
Low tissue specificity
Detected in many
RUNX1T1
ENSSSCG00000006115
ENSG00000079102
RUNX1 translocation partner 1
Low tissue specificity
Detected in all
RUNX2
ENSSSCG00000001710
ENSG00000124813
Runt related transcription factor 2
Tissue enhanced
Detected in many
ovary:
40.2
stomach:
49.4
RUNX3
ENSSSCG00000032686
ENSG00000020633
Runt related transcription factor 3
Tissue enhanced
Detected in many
lymphoid tissue:
35.4
stomach:
35.2
RUSC1
ENSSSCG00000006511
ENSG00000160753
RUN and SH3 domain containing 1
Low tissue specificity
Detected in all
RUSC2
ENSSSCG00000005308
ENSG00000198853
RUN and SH3 domain containing 2
Low tissue specificity
Detected in all
RUVBL1
ENSSSCG00000011620
ENSG00000175792
RuvB like AAA ATPase 1
Tissue enhanced
Detected in all
testis:
58.9
RUVBL2
ENSSSCG00000003152
ENSG00000183207
RuvB-like 2
Low tissue specificity
Detected in all
RWDD1
ENSSSCG00000004446
ENSG00000111832
RWD domain containing 1
Low tissue specificity
Detected in all
RWDD2A
ENSSSCG00000029129
ENSG00000013392
RWD domain containing 2A
Tissue enhanced
Detected in all
testis:
25.4
RWDD2B
ENSSSCG00000040459
ENSG00000156253
RWD domain containing 2B
Tissue enhanced
Detected in all
lens:
27.1
RWDD3
ENSSSCG00000036509
ENSG00000122481
RWD domain containing 3
Low tissue specificity
Detected in all
RWDD4
ENSSSCG00000015776
ENSG00000182552
RWD domain containing 4
Low tissue specificity
Detected in all
RXFP1
ENSSSCG00000008875
ENSG00000171509
Relaxin/insulin like family peptide receptor 1
Tissue enhanced
Detected in all
cervix:
33.0
endometrium:
21.6
RXFP4
ENSSSCG00000006503
ENSG00000173080
Relaxin-3 receptor 2
Tissue enhanced
Detected in many
cartilage:
15.9
RXRA
ENSSSCG00000038220
ENSG00000186350
Retinoid X receptor alpha
Low tissue specificity
Detected in all
RXRB
ENSSSCG00000001474
ENSG00000204231
Retinoic acid receptor RXR-beta
Low tissue specificity
Detected in all
RXRG
ENSSSCG00000006328
ENSG00000143171
Retinoic acid receptor RXR-gamma
Tissue enhanced
Detected in all
brain:
29.0
pineal gland:
61.5
RXYLT1
ENSSSCG00000000462
ENSG00000118600
Ribitol xylosyltransferase 1
Tissue enhanced
Detected in all
testis:
41.0
RYBP
ENSSSCG00000025053
ENSG00000163602
RING1 and YY1 binding protein
Low tissue specificity
Detected in all
RYK
ENSSSCG00000011642
ENSG00000163785
Receptor-like tyrosine kinase
Low tissue specificity
Detected in all
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