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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
REM1
ENSSSCG00000028529
ENSG00000088320
RRAD and GEM like GTPase 1
Low tissue specificity
Detected in many
REM2
ENSSSCG00000031874
ENSG00000139890
RRAD and GEM like GTPase 2
Low tissue specificity
Detected in all
REN
ENSSSCG00000031235
ENSG00000143839
Renin
Low tissue specificity
Detected in all
RENBP
ENSSSCG00000012792
ENSG00000102032
N-acylglucosamine 2-epimerase
Tissue enhanced
Detected in all
kidney:
50.4
REPIN1
ENSSSCG00000033708
ENSG00000214022
Replication initiator 1
Low tissue specificity
Detected in all
REPS1
ENSSSCG00000004146
ENSG00000135597
RALBP1 associated Eps domain containing 1
Low tissue specificity
Detected in all
REPS2
ENSSSCG00000012150
ENSG00000169891
RALBP1 associated Eps domain containing 2
Tissue enhanced
Detected in many
brain:
30.8
RER1
ENSSSCG00000026626
ENSG00000157916
Retention in endoplasmic reticulum sorting receptor 1
Low tissue specificity
Detected in all
RERE
ENSSSCG00000033497
ENSG00000142599
Arginine-glutamic acid dipeptide repeats
Low tissue specificity
Detected in all
RERG
ENSSSCG00000000602
ENSG00000134533
RAS like estrogen regulated growth inhibitor
Tissue enhanced
Detected in many
adrenal gland:
59.8
cervix:
47.5
RERGL
ENSSSCG00000040822
ENSG00000111404
RERG like
Tissue enhanced
Detected in many
salivary gland:
19.0
REST
ENSSSCG00000023357
ENSG00000084093
RE1 silencing transcription factor
Low tissue specificity
Detected in all
RETN
ENSSSCG00000013575
ENSG00000104918
Resistin precursor
Group enriched
Detected in some
bone marrow:
9.0
dura mater:
20.5
RETREG1
ENSSSCG00000016792
ENSG00000154153
Reticulophagy regulator 1
Low tissue specificity
Detected in all
RETREG2
ENSSSCG00000016207
ENSG00000144567
Reticulophagy regulator family member 2
Low tissue specificity
Detected in all
RETREG3
ENSSSCG00000017395
ENSG00000141699
Reticulophagy regulator family member 3
Low tissue specificity
Detected in all
RETSAT
ENSSSCG00000008237
ENSG00000042445
Retinol saturase
Tissue enhanced
Detected in all
adipose tissue:
86.0
REV1
ENSSSCG00000008179
ENSG00000135945
REV1, DNA directed polymerase
Low tissue specificity
Detected in all
REV3L
ENSSSCG00000025703
ENSG00000009413
REV3 like, DNA directed polymerase zeta catalytic subunit
Low tissue specificity
Detected in all
REX1BD
ENSSSCG00000040666
ENSG00000006015
Required for excision 1-B domain containing
Low tissue specificity
Detected in all
REXO1
ENSSSCG00000040624
ENSG00000079313
RNA exonuclease 1 homolog
Low tissue specificity
Detected in all
REXO2
ENSSSCG00000015056
ENSG00000076043
RNA exonuclease 2
Tissue enhanced
Detected in all
ovary:
85.5
REXO4
ENSSSCG00000023173
ENSG00000148300
REX4 homolog, 3'-5' exonuclease
Low tissue specificity
Detected in all
REXO5
ENSSSCG00000007855
ENSG00000005189
RNA exonuclease 5
Tissue enriched
Detected in all
testis:
117.1
RFC1
ENSSSCG00000008788
ENSG00000035928
Replication factor C subunit 1
Low tissue specificity
Detected in all
RFC2
ENSSSCG00000028504
ENSG00000049541
Replication factor C subunit 2
Low tissue specificity
Detected in all
RFC3
ENSSSCG00000009349
ENSG00000133119
Replication factor C subunit 3
Low tissue specificity
Detected in all
RFC4
ENSSSCG00000011804
ENSG00000163918
Replication factor C subunit 4
Tissue enhanced
Detected in all
testis:
44.1
RFC5
ENSSSCG00000009854
ENSG00000111445
Replication factor C subunit 5
Low tissue specificity
Detected in all
RFESD
ENSSSCG00000014141
ENSG00000175449
Rieske Fe-S domain containing
Tissue enhanced
Detected in all
lens:
38.8
RFK
ENSSSCG00000037277
ENSG00000135002
Riboflavin kinase
Tissue enhanced
Detected in all
male glands:
81.3
RFLNA
ENSSSCG00000035760
ENSG00000178882
Refilin A
Tissue enhanced
Detected in many
ovary:
45.6
stomach:
91.4
RFLNB
ENSSSCG00000038618
ENSG00000183688
Refilin B
Low tissue specificity
Detected in many
RFNG
ENSSSCG00000040385
ENSG00000169733
RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Low tissue specificity
Detected in all
RFTN1
ENSSSCG00000011198
ENSG00000131378
Raftlin, lipid raft linker 1
Tissue enhanced
Detected in many
lymphoid tissue:
43.9
RFTN2
ENSSSCG00000037483
ENSG00000162944
Raftlin family member 2
Tissue enhanced
Detected in many
brain:
56.8
cartilage:
44.8
RFWD3
ENSSSCG00000002715
ENSG00000168411
Ring finger and WD repeat domain 3
Low tissue specificity
Detected in all
RFX1
ENSSSCG00000013764
ENSG00000132005
Regulatory factor X1
Low tissue specificity
Detected in all
RFX2
ENSSSCG00000035403
ENSG00000087903
Regulatory factor X2
Tissue enhanced
Detected in many
skin:
50.4
testis:
56.2
RFX3
ENSSSCG00000005225
ENSG00000080298
Regulatory factor X3
Tissue enhanced
Detected in all
brain:
40.2
RFX5
ENSSSCG00000006625
ENSG00000143390
Regulatory factor X5
Low tissue specificity
Detected in all
RFX7
ENSSSCG00000004603
ENSG00000181827
Regulatory factor X7
Low tissue specificity
Detected in all
RFXANK
ENSSSCG00000036310
ENSG00000064490
DNA-binding protein RFXANK
Low tissue specificity
Detected in all
RFXAP
ENSSSCG00000009356
ENSG00000133111
Regulatory factor X associated protein
Low tissue specificity
Detected in all
RGCC
ENSSSCG00000009434
ENSG00000102760
Regulator of cell cycle RGCC
Low tissue specificity
Detected in all
RGL1
ENSSSCG00000015563
ENSG00000143344
Ral guanine nucleotide dissociation stimulator like 1
Low tissue specificity
Detected in all
RGL2
ENSSSCG00000001506
ENSG00000237441
Ral guanine nucleotide dissociation stimulator-like 2
Low tissue specificity
Detected in all
RGMA
ENSSSCG00000002267
ENSG00000182175
Repulsive guidance molecule BMP co-receptor a
Low tissue specificity
Detected in many
RGMB
ENSSSCG00000014176
ENSG00000174136
Repulsive guidance molecule BMP co-receptor b
Tissue enhanced
Detected in many
lens:
55.7
RGN
ENSSSCG00000022390
ENSG00000130988
Regucalcin
Tissue enriched
Detected in all
liver:
131.4
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