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UMAP gene cluster
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Keyword
Chromosome
1
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8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RABAC1
ENSSSCG00000003046
ENSG00000105404
Prenylated Rab acceptor protein 1
Tissue enhanced
Detected in all
male glands:
138.7
RABEP1
ENSSSCG00000017895
ENSG00000029725
Rabaptin, RAB GTPase binding effector protein 1
Low tissue specificity
Detected in all
RABEP2
ENSSSCG00000007806
ENSG00000177548
Rabaptin, RAB GTPase binding effector protein 2
Low tissue specificity
Detected in all
RABEPK
ENSSSCG00000005599
ENSG00000136933
Rab9 effector protein with kelch motifs
Low tissue specificity
Detected in all
RABGAP1
ENSSSCG00000020743
ENSG00000011454
RAB GTPase activating protein 1
Low tissue specificity
Detected in all
RABGAP1L
ENSSSCG00000015499
ENSG00000152061
RAB GTPase activating protein 1 like
Tissue enhanced
Detected in all
heart:
154.0
RABGGTA
ENSSSCG00000001992
ENSG00000100949
Geranylgeranyl transferase type-2 subunit alpha
Low tissue specificity
Detected in many
RABIF
ENSSSCG00000022787
ENSG00000183155
RAB interacting factor
Low tissue specificity
Detected in all
RABL3
ENSSSCG00000035258
ENSG00000144840
RAB, member of RAS oncogene family like 3
Low tissue specificity
Detected in all
RABL6
ENSSSCG00000005841
ENSG00000196642
RAB, member RAS oncogene family like 6
Low tissue specificity
Detected in all
RAC1
ENSSSCG00000035090
ENSG00000136238
Ras-related C3 botulinum toxin substrate 1
Low tissue specificity
Detected in all
RAC2
ENSSSCG00000021944
ENSG00000128340
Rac family small GTPase 2
Tissue enhanced
Detected in many
lymphoid tissue:
60.0
stomach:
53.4
RAC3
ENSSSCG00000036973
ENSG00000169750
Rac family small GTPase 3
Low tissue specificity
Detected in all
RACK1
ENSSSCG00000029724
ENSG00000204628
Receptor of activated protein C kinase 1 Receptor of activated protein C kinase 1, N-terminally processed
Low tissue specificity
Detected in all
RAD1
ENSSSCG00000016826
ENSG00000113456
RAD1 checkpoint DNA exonuclease
Low tissue specificity
Detected in all
RAD17
ENSSSCG00000016960
ENSG00000152942
RAD17 checkpoint clamp loader component
Low tissue specificity
Detected in all
RAD18
ENSSSCG00000026158
ENSG00000070950
E3 ubiquitin-protein ligase RAD18
Tissue enhanced
Detected in all
testis:
39.9
RAD21
ENSSSCG00000006014
ENSG00000164754
RAD21 cohesin complex component
Low tissue specificity
Detected in all
RAD23A
ENSSSCG00000013747
ENSG00000179262
RAD23 homolog A, nucleotide excision repair protein
Tissue enhanced
Detected in all
lens:
68.9
RAD51AP1
ENSSSCG00000000722
ENSG00000111247
RAD51 associated protein 1
Low tissue specificity
Detected in all
RAD51B
ENSSSCG00000028877
ENSG00000182185
RAD51 paralog B
Low tissue specificity
Detected in all
RAD51C
ENSSSCG00000023955
ENSG00000108384
RAD51 paralog C
Low tissue specificity
Detected in all
RAD51D
ENSSSCG00000026989
ENSG00000185379
RAD51 paralog D
Low tissue specificity
Detected in all
RAD52
ENSSSCG00000000754
ENSG00000002016
DNA repair protein RAD52 homolog
Low tissue specificity
Detected in all
RAD54L
ENSSSCG00000003905
ENSG00000085999
DNA repair and recombination protein RAD54-like
Tissue enhanced
Detected in all
lymphoid tissue:
32.3
RAD54L2
ENSSSCG00000011425
ENSG00000164080
RAD54 like 2
Low tissue specificity
Detected in all
RAD9A
ENSSSCG00000012914
ENSG00000172613
RAD9 checkpoint clamp component A
Low tissue specificity
Detected in all
RAD9B
ENSSSCG00000009824
ENSG00000151164
RAD9 checkpoint clamp component B
Low tissue specificity
Detected in all
RADIL
ENSSSCG00000007575
ENSG00000157927
Rap associating with DIL domain
Tissue enhanced
Detected in many
epididymis:
42.6
RAE1
ENSSSCG00000007503
ENSG00000101146
MRNA export factor
Low tissue specificity
Detected in all
RAF1
ENSSSCG00000024453
ENSG00000132155
Raf-1 proto-oncogene, serine/threonine kinase
Low tissue specificity
Detected in all
RAG2
ENSSSCG00000034285
ENSG00000175097
V(D)J recombination-activating protein 2
Tissue enriched
Detected in many
lymphoid tissue:
40.3
RAI1
ENSSSCG00000038164
ENSG00000108557
Retinoic acid induced 1
Low tissue specificity
Detected in all
RAI14
ENSSSCG00000016824
ENSG00000039560
Ankycorbin
Low tissue specificity
Detected in all
RAI2
ENSSSCG00000012153
ENSG00000131831
Retinoic acid induced 2
Tissue enhanced
Detected in many
cervix:
33.3
fallopian tube:
29.7
heart:
25.9
RALA
ENSSSCG00000029741
ENSG00000006451
RAS like proto-oncogene A
Low tissue specificity
Detected in all
RALB
ENSSSCG00000025455
ENSG00000144118
RAS like proto-oncogene B
Low tissue specificity
Detected in all
RALBP1
ENSSSCG00000003680
ENSG00000017797
RalA binding protein 1
Low tissue specificity
Detected in all
RALGAPA1
ENSSSCG00000032377
ENSG00000174373
Ral GTPase activating protein catalytic alpha subunit 1
Low tissue specificity
Detected in all
RALGAPA2
ENSSSCG00000026506
ENSG00000188559
Ral GTPase activating protein catalytic alpha subunit 2
Low tissue specificity
Detected in all
RALGAPB
ENSSSCG00000007345
ENSG00000170471
Ral GTPase activating protein non-catalytic beta subunit
Tissue enhanced
Detected in all
male glands:
77.9
RALGPS1
ENSSSCG00000005607
ENSG00000136828
Ral GEF with PH domain and SH3 binding motif 1
Low tissue specificity
Detected in all
RALGPS2
ENSSSCG00000015523
ENSG00000116191
Ral GEF with PH domain and SH3 binding motif 2
Low tissue specificity
Detected in all
RALY
ENSSSCG00000007275
ENSG00000125970
RALY heterogeneous nuclear ribonucleoprotein
Low tissue specificity
Detected in all
RAMP1
ENSSSCG00000016331
ENSG00000132329
Receptor activity-modifying protein 1
Tissue enhanced
Detected in many
heart:
145.3
skeletal muscle:
82.5
RAMP2
ENSSSCG00000017389
ENSG00000131477
Receptor activity-modifying protein 2 precursor
Low tissue specificity
Detected in many
RAMP3
ENSSSCG00000031144
ENSG00000122679
Receptor activity-modifying protein 3 precursor
Tissue enhanced
Detected in many
brain:
36.7
pineal gland:
12.1
RANBP1
ENSSSCG00000038308
ENSG00000099901
Ran-specific GTPase-activating protein
Tissue enhanced
Detected in all
testis:
130.3
RANBP10
ENSSSCG00000021803
ENSG00000141084
RAN binding protein 10
Low tissue specificity
Detected in all
RANBP17
ENSSSCG00000017000
ENSG00000204764
RAN binding protein 17
Low tissue specificity
Detected in all
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