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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
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11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SPSB3
ENSSSCG00000039024
ENSG00000162032
SplA/ryanodine receptor domain and SOCS box containing 3
Low tissue specificity
Detected in all
SPTAN1
ENSSSCG00000005654
ENSG00000197694
Spectrin alpha, non-erythrocytic 1
Low tissue specificity
Detected in all
SPTBN1
ENSSSCG00000040786
ENSG00000115306
Spectrin beta, non-erythrocytic 1
Low tissue specificity
Detected in all
SPTBN2
ENSSSCG00000038508
ENSG00000173898
Spectrin beta, non-erythrocytic 2
Tissue enhanced
Detected in many
brain:
35.5
cornea:
32.4
testis:
42.8
SPTLC1
ENSSSCG00000009594
ENSG00000090054
Serine palmitoyltransferase long chain base subunit 1
Low tissue specificity
Detected in all
SPTLC2
ENSSSCG00000002404
ENSG00000100596
Serine palmitoyltransferase long chain base subunit 2
Low tissue specificity
Detected in all
SPTLC3
ENSSSCG00000007072
ENSG00000172296
Serine palmitoyltransferase long chain base subunit 3
Tissue enhanced
Detected in many
skin:
21.9
vagus nerve:
24.0
SPTSSA
ENSSSCG00000039421
ENSG00000165389
Serine palmitoyltransferase small subunit A
Low tissue specificity
Detected in all
SPTY2D1
ENSSSCG00000013361
ENSG00000179119
SPT2 chromatin protein domain containing 1
Tissue enriched
Detected in all
male glands:
56.6
SPX
ENSSSCG00000032123
ENSG00000134548
Spexin hormone
Tissue enhanced
Detected in many
brain:
30.7
large intestine:
33.5
stomach:
24.6
SQLE
ENSSSCG00000005970
ENSG00000104549
Squalene monooxygenase
Low tissue specificity
Detected in all
SQSTM1
ENSSSCG00000014016
ENSG00000161011
Sequestosome 1
Low tissue specificity
Detected in all
SRA1
ENSSSCG00000014365
ENSG00000213523
Steroid receptor RNA activator 1
Low tissue specificity
Detected in all
SRARP
ENSSSCG00000036026
ENSG00000183888
Steroid receptor associated and regulated protein
Low tissue specificity
Detected in all
SRBD1
ENSSSCG00000008445
ENSG00000068784
S1 RNA binding domain 1
Low tissue specificity
Detected in all
SRC
ENSSSCG00000007334
ENSG00000197122
SRC proto-oncogene, non-receptor tyrosine kinase
Low tissue specificity
Detected in all
SRCIN1
ENSSSCG00000018056
ENSG00000277363
SRC kinase signaling inhibitor 1
Group enriched
Detected in many
brain:
42.1
skin:
49.3
SREBF1
ENSSSCG00000033626
ENSG00000072310
Sterol regulatory element-binding protein 1
Low tissue specificity
Detected in all
SREBF2
ENSSSCG00000026092
ENSG00000198911
Sterol regulatory element binding transcription factor 2
Tissue enhanced
Detected in all
stomach:
109.7
SREK1
ENSSSCG00000032726
ENSG00000153914
Splicing regulatory glutamic acid and lysine rich protein 1
Low tissue specificity
Detected in all
SRF
ENSSSCG00000001661
ENSG00000112658
Serum response factor
Tissue enhanced
Detected in all
smooth muscle:
54.2
SRFBP1
ENSSSCG00000022656
ENSG00000151304
Serum response factor-binding protein 1
Low tissue specificity
Detected in all
SRGAP1
ENSSSCG00000029815
ENSG00000196935
SLIT-ROBO Rho GTPase activating protein 1
Low tissue specificity
Detected in many
SRGAP3
ENSSSCG00000033624
ENSG00000196220
SLIT-ROBO Rho GTPase activating protein 3
Tissue enhanced
Detected in many
brain:
27.3
SRGN
ENSSSCG00000023374
ENSG00000122862
Serglycin
Tissue enhanced
Detected in many
bone marrow:
75.2
dura mater:
42.3
SRI
ENSSSCG00000015298
ENSG00000075142
Sorcin isoform 2
Tissue enriched
Detected in all
lens:
129.2
SRP14
ENSSSCG00000004785
ENSG00000140319
Signal recognition particle 14
Low tissue specificity
Detected in all
SRP19
ENSSSCG00000026230
ENSG00000153037
Signal recognition particle 19
Low tissue specificity
Detected in all
SRP54
ENSSSCG00000001955
ENSG00000100883
Signal recognition particle 54
Low tissue specificity
Detected in all
SRP68
ENSSSCG00000017191
ENSG00000167881
Signal recognition particle 68
Low tissue specificity
Detected in all
SRP72
ENSSSCG00000008900
ENSG00000174780
Signal recognition particle 72
Low tissue specificity
Detected in all
SRPK1
ENSSSCG00000001554
ENSG00000096063
SRSF protein kinase 1
Low tissue specificity
Detected in all
SRPK2
ENSSSCG00000026110
ENSG00000135250
SRSF protein kinase 2
Tissue enhanced
Detected in all
testis:
64.4
SRPRA
ENSSSCG00000015227
ENSG00000182934
SRP receptor alpha subunit
Tissue enhanced
Detected in all
male glands:
121.3
SRPRB
ENSSSCG00000011639
ENSG00000144867
SRP receptor beta subunit
Tissue enhanced
Detected in all
male glands:
55.0
SRPX
ENSSSCG00000012234
ENSG00000101955
Sushi repeat containing protein, X-linked
Low tissue specificity
Detected in all
SRR
ENSSSCG00000039918
ENSG00000167720
Serine racemase
Low tissue specificity
Detected in all
SRRM1
ENSSSCG00000032947
ENSG00000133226
Serine and arginine repetitive matrix 1
Low tissue specificity
Detected in all
SRRM2
ENSSSCG00000023304
ENSG00000167978
Serine/arginine repetitive matrix protein 2
Low tissue specificity
Detected in all
SRRM3
ENSSSCG00000032250
ENSG00000177679
Serine/arginine repetitive matrix 3
Tissue enhanced
Detected in many
adrenal gland:
53.3
brain:
19.6
cervix:
18.5
retina:
25.2
SRRT
ENSSSCG00000024789
ENSG00000087087
Serrate, RNA effector molecule
Low tissue specificity
Detected in all
SRSF1
ENSSSCG00000017626
ENSG00000136450
Serine/arginine-rich splicing factor 1
Low tissue specificity
Detected in all
SRSF10
ENSSSCG00000036293
ENSG00000188529
Serine/arginine-rich splicing factor 10 isoform 1
Low tissue specificity
Detected in all
SRSF11
ENSSSCG00000003791
ENSG00000116754
Serine/arginine-rich splicing factor 11
Low tissue specificity
Detected in all
SRSF12
ENSSSCG00000032781
ENSG00000154548
Serine/arginine-rich splicing factor 12
Tissue enhanced
Detected in all
pineal gland:
31.4
SRSF2
ENSSSCG00000036592
ENSG00000161547
Serine/arginine-rich splicing factor 2
Low tissue specificity
Detected in all
SRSF3
ENSSSCG00000001564
ENSG00000112081
Serine and arginine rich splicing factor 3
Low tissue specificity
Detected in all
SRSF4
ENSSSCG00000003589
ENSG00000116350
Serine/arginine-rich splicing factor 4
Low tissue specificity
Detected in all
SRSF5
ENSSSCG00000032583
ENSG00000100650
Serine and arginine rich splicing factor 5
Low tissue specificity
Detected in all
SRSF6
ENSSSCG00000007362
ENSG00000124193
Serine/arginine-rich splicing factor 6
Low tissue specificity
Detected in all
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