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Human disease related genes
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UMAP gene cluster
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Chromosome
1
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MT
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
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Heart
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Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SEMA3B
ENSSSCG00000011400
ENSG00000012171
Semaphorin 3B
Tissue enhanced
Detected in many
vagus nerve:
112.4
SEMA3C
ENSSSCG00000023784
ENSG00000075223
Semaphorin 3C
Tissue enhanced
Detected in many
cartilage:
97.2
SEMA3D
ENSSSCG00000015396
ENSG00000153993
Semaphorin 3D
Group enriched
Detected in many
cartilage:
103.9
thyroid gland:
27.0
SEMA3E
ENSSSCG00000015399
ENSG00000170381
Semaphorin 3E
Tissue enhanced
Detected in many
choroid plexus:
35.4
SEMA3F
ENSSSCG00000011398
ENSG00000001617
Semaphorin 3F
Tissue enhanced
Detected in many
mesothelial tissue:
41.2
SEMA3G
ENSSSCG00000011440
ENSG00000010319
Semaphorin 3G
Low tissue specificity
Detected in many
SEMA4B
ENSSSCG00000031719
ENSG00000185033
Semaphorin 4B
Low tissue specificity
Detected in all
SEMA4C
ENSSSCG00000008197
ENSG00000168758
Semaphorin 4C
Tissue enhanced
Detected in all
vagus nerve:
60.1
SEMA4D
ENSSSCG00000009584
ENSG00000187764
Semaphorin 4D
Tissue enhanced
Detected in all
brain:
61.2
SEMA4F
ENSSSCG00000008262
ENSG00000135622
Ssemaphorin 4F
Low tissue specificity
Detected in many
SEMA4G
ENSSSCG00000029533
ENSG00000095539
Semaphorin 4G
Tissue enhanced
Detected in all
liver:
79.5
stomach:
30.8
SEMA6A
ENSSSCG00000014224
ENSG00000092421
Semaphorin 6A
Low tissue specificity
Detected in many
SEMA6B
ENSSSCG00000035176
ENSG00000167680
Semaphorin 6B
Low tissue specificity
Detected in all
SEMA6D
ENSSSCG00000004663
ENSG00000137872
Semaphorin 6D
Low tissue specificity
Detected in all
SENP1
ENSSSCG00000000816
ENSG00000079387
SUMO1/sentrin specific peptidase 1
Low tissue specificity
Detected in all
SENP2
ENSSSCG00000011794
ENSG00000163904
SUMO1/sentrin/SMT3 specific peptidase 2
Low tissue specificity
Detected in all
SENP5
ENSSSCG00000011841
ENSG00000119231
SUMO1/sentrin specific peptidase 5
Low tissue specificity
Detected in all
SENP6
ENSSSCG00000020702
ENSG00000112701
SUMO1/sentrin specific peptidase 6
Low tissue specificity
Detected in all
SENP7
ENSSSCG00000021791
ENSG00000138468
SUMO1/sentrin specific peptidase 7
Low tissue specificity
Detected in all
SENP8
ENSSSCG00000025616
ENSG00000166192
SUMO/sentrin peptidase family member, NEDD8 specific
Low tissue specificity
Detected in all
SEPSECS
ENSSSCG00000025315
ENSG00000109618
Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
Tissue enhanced
Detected in all
liver:
29.5
SEPT1
ENSSSCG00000007800
ENSG00000180096
Septin-1
Tissue enhanced
Detected in all
lymphoid tissue:
76.7
SEPT10
ENSSSCG00000023050
ENSG00000186522
Septin 10
Low tissue specificity
Detected in all
SEPT11
ENSSSCG00000008986
ENSG00000138758
Septin 11
Low tissue specificity
Detected in all
SEPT12
ENSSSCG00000007933
ENSG00000140623
Septin-12
Tissue enriched
Detected in many
testis:
63.0
SEPT3
ENSSSCG00000000040
ENSG00000100167
Septin 3
Tissue enhanced
Detected in all
brain:
67.7
testis:
47.2
SEPT4
ENSSSCG00000017643
ENSG00000108387
Septin 4
Tissue enriched
Detected in many
brain:
117.5
SEPT6
ENSSSCG00000012619
ENSG00000125354
Septin 6
Tissue enhanced
Detected in all
lymphoid tissue:
112.6
SEPT7
ENSSSCG00000016661
ENSG00000122545
Septin 7
Tissue enhanced
Detected in all
brain:
111.0
SEPT8
ENSSSCG00000014285
ENSG00000164402
Septin 8
Tissue enhanced
Detected in all
brain:
77.3
SEPT9
ENSSSCG00000017168
ENSG00000184640
Septin 9
Low tissue specificity
Detected in all
SERAC1
ENSSSCG00000012314
ENSG00000122335
Serine active site containing 1
Low tissue specificity
Detected in all
SERBP1
ENSSSCG00000003798
ENSG00000142864
SERPINE1 mRNA binding protein 1
Low tissue specificity
Detected in all
SERHL2
ENSSSCG00000034350
ENSG00000183569
Serine hydrolase like 2
Tissue enhanced
Detected in all
kidney:
41.1
pineal gland:
38.9
SERINC1
ENSSSCG00000004237
ENSG00000111897
Serine incorporator 1
Low tissue specificity
Detected in all
SERINC2
ENSSSCG00000023585
ENSG00000168528
Serine incorporator 2 precursor
Tissue enhanced
Detected in many
kidney:
49.3
stomach:
57.8
SERINC3
ENSSSCG00000039591
ENSG00000132824
Serine incorporator 3
Low tissue specificity
Detected in all
SERINC5
ENSSSCG00000014119
ENSG00000164300
Serine incorporator 5
Low tissue specificity
Detected in all
SERP1
ENSSSCG00000037465
ENSG00000120742
Stress-associated endoplasmic reticulum protein 1
Tissue enhanced
Detected in all
male glands:
103.7
salivary gland:
71.0
SERP2
ENSSSCG00000040405
ENSG00000151778
Stress associated endoplasmic reticulum protein family member 2
Tissue enhanced
Detected in many
brain:
26.5
pineal gland:
11.2
SERPINA1
ENSSSCG00000002476
ENSG00000197249
Alpha-1-antitrypsin precursor
Tissue enhanced
Detected in many
cartilage:
61.3
gallbladder:
123.2
liver:
272.0
SERPINB1
ENSSSCG00000001011
ENSG00000021355
Serpin family B member 1
Tissue enriched
Detected in many
lens:
240.5
SERPINB10
ENSSSCG00000004889
ENSG00000242550
Serpin B10
Tissue enhanced
Detected in all
mouth:
23.4
skin:
30.9
SERPINB11
ENSSSCG00000022337
ENSG00000206072
Serpin family B member 11 (gene/pseudogene)
Tissue enhanced
Detected in all
mouth:
23.9
SERPINB2
ENSSSCG00000004890
ENSG00000197632
Serpin family B member 2
Tissue enhanced
Detected in all
heart:
32.2
SERPINB6
ENSSSCG00000038404
ENSG00000124570
Serpin family B member 6
Group enriched
Detected in all
lens:
176.6
male glands:
47.4
SERPINB7
ENSSSCG00000004891
ENSG00000166396
Serpin family B member 7
Low tissue specificity
Detected in all
SERPINB8
ENSSSCG00000004888
ENSG00000166401
Serpin family B member 8
Tissue enhanced
Detected in many
adrenal gland:
32.7
ovary:
18.3
SERPINB9
ENSSSCG00000031615
ENSG00000170542
Serpin B9
Tissue enhanced
Detected in many
lymphoid tissue:
43.9
SERPINE2
ENSSSCG00000016233
ENSG00000135919
Glia-derived nexin precursor
Group enriched
Detected in many
cartilage:
193.9
ovary:
110.5
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