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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SAMD14
ENSSSCG00000017585
ENSG00000167100
Sterile alpha motif domain containing 14
Tissue enhanced
Detected in many
brain:
24.7
SAMD15
ENSSSCG00000002400
ENSG00000100583
Sterile alpha motif domain containing 15
Tissue enhanced
Detected in many
fallopian tube:
29.3
testis:
46.2
upper respiratory system:
21.6
SAMD5
ENSSSCG00000004112
ENSG00000203727
Sterile alpha motif domain containing 5
Tissue enhanced
Detected in many
vagus nerve:
47.2
SAMD8
ENSSSCG00000010319
ENSG00000156671
Sterile alpha motif domain containing 8
Low tissue specificity
Detected in all
SAMD9
ENSSSCG00000027372
ENSG00000205413
Sterile alpha motif domain containing 9
Tissue enhanced
Detected in many
lymphoid tissue:
35.8
SAMHD1
ENSSSCG00000027806
ENSG00000101347
Deoxynucleoside triphosphate triphosphohydrolase SAMHD1
Tissue enhanced
Detected in all
male glands:
89.0
SAMM50
ENSSSCG00000028346
ENSG00000100347
SAMM50 sorting and assembly machinery component
Low tissue specificity
Detected in all
SAMSN1
ENSSSCG00000038062
ENSG00000155307
SAM domain, SH3 domain and nuclear localization signals 1
Low tissue specificity
Detected in all
SAP130
ENSSSCG00000015859
ENSG00000136715
Sin3A associated protein 130
Low tissue specificity
Detected in all
SAP18
ENSSSCG00000028865
ENSG00000150459
Sin3A associated protein 18
Tissue enhanced
Detected in all
lens:
63.9
SAP30
ENSSSCG00000030118
ENSG00000164105
Sin3A associated protein 30
Low tissue specificity
Detected in all
SAP30BP
ENSSSCG00000017205
ENSG00000161526
SAP30 binding protein
Low tissue specificity
Detected in all
SAP30L
ENSSSCG00000033176
ENSG00000164576
SAP30 like
Low tissue specificity
Detected in all
SAPCD1
ENSSSCG00000036076
ENSG00000228727
Suppressor APC domain containing 1
Tissue enriched
Detected in many
lens:
82.1
SAR1A
ENSSSCG00000010260
ENSG00000079332
GTP-binding protein SAR1a
Tissue enhanced
Detected in all
male glands:
82.8
SAR1B
ENSSSCG00000014305
ENSG00000152700
GTP-binding protein SAR1b
Tissue enhanced
Detected in all
skeletal muscle:
49.6
SARAF
ENSSSCG00000033402
ENSG00000133872
Store-operated calcium entry associated regulatory factor
Tissue enhanced
Detected in all
male glands:
57.9
SARM1
ENSSSCG00000030358
ENSG00000004139
Sterile alpha and TIR motif containing 1
Low tissue specificity
Detected in all
SARNP
ENSSSCG00000000364
ENSG00000205323
SAP domain containing ribonucleoprotein
Low tissue specificity
Detected in all
SARS
ENSSSCG00000006835
ENSG00000031698
Seryl-tRNA synthetase
Low tissue specificity
Detected in all
SART1
ENSSSCG00000012963
ENSG00000175467
SART1, U4/U6.U5 tri-snRNP-associated protein 1
Low tissue specificity
Detected in all
SART3
ENSSSCG00000009946
ENSG00000075856
Squamous cell carcinoma antigen recognized by T cells 3
Low tissue specificity
Detected in all
SASH1
ENSSSCG00000033175
ENSG00000111961
SAM and SH3 domain containing 1
Low tissue specificity
Detected in all
SASH3
ENSSSCG00000012652
ENSG00000122122
SAM and SH3 domain containing 3
Tissue enhanced
Detected in many
lymphoid tissue:
58.0
SASS6
ENSSSCG00000028821
ENSG00000156876
SAS-6 centriolar assembly protein
Tissue enhanced
Detected in all
liver:
34.5
lymphoid tissue:
27.4
SAT1
ENSSSCG00000012173
ENSG00000130066
Diamine acetyltransferase 1
Tissue enhanced
Detected in all
adrenal gland:
214.6
SAT2
ENSSSCG00000017952
ENSG00000141504
Diamine acetyltransferase 2
Low tissue specificity
Detected in all
SATB1
ENSSSCG00000011201
ENSG00000182568
SATB homeobox 1
Tissue enriched
Detected in many
lymphoid tissue:
199.2
SAV1
ENSSSCG00000005021
ENSG00000151748
Salvador family WW domain containing protein 1
Low tissue specificity
Detected in all
SAXO2
ENSSSCG00000031963
ENSG00000188659
Stabilizer of axonemal microtubules 2
Tissue enhanced
Detected in all
fallopian tube:
25.3
upper respiratory system:
26.2
SAYSD1
ENSSSCG00000033246
ENSG00000112167
SAYSVFN motif domain containing 1
Tissue enriched
Detected in all
testis:
83.1
SBDS
ENSSSCG00000007732
ENSG00000126524
Ribosome maturation protein SBDS
Tissue enhanced
Detected in all
lens:
115.3
SBF1
ENSSSCG00000000968
ENSG00000100241
Myotubularin-related protein 5
Low tissue specificity
Detected in all
SBF2
ENSSSCG00000013409
ENSG00000133812
SET binding factor 2
Low tissue specificity
Detected in all
SBK2
ENSSSCG00000033532
ENSG00000187550
SH3 domain binding kinase family member 2
Tissue enhanced
Detected in many
heart:
32.6
mouth:
24.9
skeletal muscle:
33.9
SBNO1
ENSSSCG00000009776
ENSG00000139697
Strawberry notch homolog 1
Low tissue specificity
Detected in all
SBNO2
ENSSSCG00000030042
ENSG00000064932
Strawberry notch homolog 2
Low tissue specificity
Detected in all
SBSPON
ENSSSCG00000006183
ENSG00000164764
Somatomedin B and thrombospondin type 1 domain containing
Low tissue specificity
Detected in all
SC5D
ENSSSCG00000028517
ENSG00000109929
Sterol-C5-desaturase
Tissue enhanced
Detected in all
brain:
42.8
liver:
49.5
male glands:
37.0
SCAF1
ENSSSCG00000038807
ENSG00000126461
SR-related CTD associated factor 1
Low tissue specificity
Detected in all
SCAF11
ENSSSCG00000000806
ENSG00000139218
SR-related CTD associated factor 11
Low tissue specificity
Detected in all
SCAF4
ENSSSCG00000021023
ENSG00000156304
SR-related CTD associated factor 4
Low tissue specificity
Detected in all
SCAF8
ENSSSCG00000004070
ENSG00000213079
SR-related CTD associated factor 8
Low tissue specificity
Detected in all
SCAI
ENSSSCG00000005598
ENSG00000173611
Suppressor of cancer cell invasion
Low tissue specificity
Detected in all
SCAMP1
ENSSSCG00000034795
ENSG00000085365
Secretory carrier-associated membrane protein 1
Tissue enhanced
Detected in all
pineal gland:
37.8
SCAMP2
ENSSSCG00000001892
ENSG00000140497
Secretory carrier-associated membrane protein 2
Low tissue specificity
Detected in all
SCAMP3
ENSSSCG00000006520
ENSG00000116521
Secretory carrier-associated membrane protein 3
Low tissue specificity
Detected in all
SCAMP4
ENSSSCG00000013446
ENSG00000227500
Secretory carrier membrane protein 4
Low tissue specificity
Detected in all
SCAMP5
ENSSSCG00000001887
ENSG00000198794
Secretory carrier membrane protein 5
Tissue enhanced
Detected in many
brain:
40.0
retina:
30.2
SCAND1
ENSSSCG00000007312
ENSG00000171222
SCAN domain containing 1
Low tissue specificity
Detected in all
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