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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other diseases
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Subclass
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15887 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
USP11
ENSSSCG00000012273
ENSG00000102226
Ubiquitin specific peptidase 11
Low tissue specificity
Detected in all
USP12
ENSSSCG00000009302
ENSG00000152484
Ubiquitin specific peptidase 12
Low tissue specificity
Detected in all
USP13
ENSSSCG00000011765
ENSG00000058056
Ubiquitin specific peptidase 13
Group enriched
Detected in many
heart:
60.7
skeletal muscle:
68.4
USP14
ENSSSCG00000022559
ENSG00000101557
Ubiquitin specific peptidase 14
Low tissue specificity
Detected in all
USP15
ENSSSCG00000000457
ENSG00000135655
Ubiquitin specific peptidase 15
Low tissue specificity
Detected in all
USP16
ENSSSCG00000027594
ENSG00000156256
Ubiquitin specific peptidase 16
Low tissue specificity
Detected in all
USP18
ENSSSCG00000000774
ENSG00000161133,ENSG00000184979
Ubl carboxyl-terminal hydrolase 18
Low tissue specificity
Detected in many
USP19
ENSSSCG00000011375
ENSG00000172046
Ubiquitin carboxyl-terminal hydrolase 19
Low tissue specificity
Detected in all
USP2
ENSSSCG00000015120
ENSG00000036672
Ubiquitin specific peptidase 2
Tissue enhanced
Detected in many
skeletal muscle:
56.0
testis:
58.7
USP20
ENSSSCG00000024341
ENSG00000136878
Ubiquitin specific peptidase 20
Low tissue specificity
Detected in all
USP21
ENSSSCG00000006362
ENSG00000143258
Ubiquitin specific peptidase 21
Low tissue specificity
Detected in all
USP22
ENSSSCG00000035671
ENSG00000124422
Ubiquitin specific peptidase 22
Low tissue specificity
Detected in all
USP24
ENSSSCG00000029633
ENSG00000162402
Ubiquitin specific peptidase 24
Low tissue specificity
Detected in all
USP25
ENSSSCG00000024623
ENSG00000155313
Ubiquitin specific peptidase 25
Low tissue specificity
Detected in all
USP27X
ENSSSCG00000012305
ENSG00000273820
Ubiquitin specific peptidase 27, X-linked
Tissue enhanced
Detected in many
adrenal gland:
17.8
brain:
19.9
pituitary gland:
17.4
USP28
ENSSSCG00000015052
ENSG00000048028
Ubiquitin specific peptidase 28
Tissue enhanced
Detected in all
heart:
44.1
skeletal muscle:
37.7
USP3
ENSSSCG00000028737
ENSG00000140455
Ubiquitin specific peptidase 3
Low tissue specificity
Detected in all
USP30
ENSSSCG00000032917
ENSG00000135093
Ubiquitin specific peptidase 30
Low tissue specificity
Detected in all
USP31
ENSSSCG00000030424
ENSG00000103404
Ubiquitin specific peptidase 31
Tissue enhanced
Detected in all
brain:
29.7
USP34
ENSSSCG00000008382
ENSG00000115464
Ubiquitin specific peptidase 34
Low tissue specificity
Detected in all
USP35
ENSSSCG00000014892
ENSG00000118369
Ubiquitin specific peptidase 35
Low tissue specificity
Detected in many
USP36
ENSSSCG00000017165
ENSG00000055483
Ubiquitin specific peptidase 36
Low tissue specificity
Detected in all
USP37
ENSSSCG00000016194
ENSG00000135913
Ubiquitin specific peptidase 37
Low tissue specificity
Detected in all
USP38
ENSSSCG00000009049
ENSG00000170185
Ubiquitin specific peptidase 38
Low tissue specificity
Detected in all
USP39
ENSSSCG00000030435
ENSG00000168883
Ubiquitin specific peptidase 39
Low tissue specificity
Detected in all
USP4
ENSSSCG00000011382
ENSG00000114316
Ubiquitin carboxyl-terminal hydrolase 4
Low tissue specificity
Detected in all
USP40
ENSSSCG00000016306
ENSG00000085982
Ubiquitin specific peptidase 40
Low tissue specificity
Detected in all
USP42
ENSSSCG00000032705
ENSG00000106346
Ubiquitin specific peptidase 42
Low tissue specificity
Detected in all
USP45
ENSSSCG00000004351
ENSG00000123552
Ubiquitin specific peptidase 45
Low tissue specificity
Detected in all
USP47
ENSSSCG00000013402
ENSG00000170242
Ubiquitin specific peptidase 47
Low tissue specificity
Detected in all
USP48
ENSSSCG00000024197
ENSG00000090686
Ubiquitin specific peptidase 48
Low tissue specificity
Detected in all
USP49
ENSSSCG00000001629
ENSG00000164663
Ubiquitin specific peptidase 49
Tissue enhanced
Detected in all
testis:
33.1
USP5
ENSSSCG00000000684
ENSG00000111667
Ubiquitin specific peptidase 5
Tissue enhanced
Detected in all
lens:
49.3
USP51
ENSSSCG00000012349
ENSG00000247746
Ubiquitin specific peptidase 51
Group enriched
Detected in many
ductus deferens:
24.2
epididymis:
26.7
USP53
ENSSSCG00000023174
ENSG00000145390
Ubiquitin specific peptidase 53
Low tissue specificity
Detected in all
USP54
ENSSSCG00000010302
ENSG00000166348
Ubiquitin specific peptidase 54
Tissue enhanced
Detected in all
brain:
41.8
male glands:
45.2
USP6NL
ENSSSCG00000011120
ENSG00000148429
USP6 N-terminal like
Low tissue specificity
Detected in all
USP7
ENSSSCG00000007907
ENSG00000187555
Ubiquitin carboxyl-terminal hydrolase 7
Low tissue specificity
Detected in all
USP8
ENSSSCG00000004639
ENSG00000138592
Ubiquitin specific peptidase 8
Low tissue specificity
Detected in all
USP9X
ENSSSCG00000012251
ENSG00000124486
Ubiquitin specific peptidase 9, X-linked
Low tissue specificity
Detected in all
USPL1
ENSSSCG00000028065
ENSG00000132952
Ubiquitin specific peptidase like 1
Low tissue specificity
Detected in all
UST
ENSSSCG00000028974
ENSG00000111962
Uronyl 2-sulfotransferase
Tissue enhanced
Detected in many
lymphoid tissue:
41.2
UTP11
ENSSSCG00000003645
ENSG00000183520
Probable U3 small nucleolar RNA-associated protein 11
Low tissue specificity
Detected in all
UTP15
ENSSSCG00000014068
ENSG00000164338
U3 small nucleolar RNA-associated protein 15 homolog
Low tissue specificity
Detected in all
UTP18
ENSSSCG00000017593
ENSG00000011260
UTP18, small subunit processome component
Low tissue specificity
Detected in all
UTP20
ENSSSCG00000000869
ENSG00000120800
UTP20, small subunit processome component
Tissue enhanced
Detected in all
male glands:
45.7
UTP23
ENSSSCG00000030493
ENSG00000147679
UTP23, small subunit processome component
Low tissue specificity
Detected in all
UTP3
ENSSSCG00000028466
ENSG00000132467
Something about silencing protein 10
Low tissue specificity
Detected in all
UTP4
ENSSSCG00000028638
ENSG00000141076
UTP4, small subunit processome component
Low tissue specificity
Detected in all
UTP6
ENSSSCG00000017745
ENSG00000108651
UTP6, small subunit processome component
Tissue enhanced
Detected in all
cartilage:
59.4
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