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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
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6
7
8
9
10
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12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15887 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TANC2
ENSSSCG00000017298
ENSG00000170921
Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
Low tissue specificity
Detected in many
TANGO2
ENSSSCG00000010134
ENSG00000183597
Transport and golgi organization 2 homolog
Tissue enhanced
Detected in all
lens:
67.3
TANGO6
ENSSSCG00000031767
ENSG00000103047
Transport and golgi organization 6 homolog
Low tissue specificity
Detected in all
TANK
ENSSSCG00000015889
ENSG00000136560
TRAF family member associated NFKB activator
Low tissue specificity
Detected in all
TAOK1
ENSSSCG00000017790
ENSG00000160551
TAO kinase 1
Low tissue specificity
Detected in all
TAOK2
ENSSSCG00000031967
ENSG00000149930
TAO kinase 2
Low tissue specificity
Detected in all
TAOK3
ENSSSCG00000009850
ENSG00000135090
TAO kinase 3
Low tissue specificity
Detected in all
TAP1
ENSSSCG00000025618
ENSG00000168394
Antigen peptide transporter 1
Tissue enhanced
Detected in many
large intestine:
38.1
stomach:
49.4
TAPBP
ENSSSCG00000001507
ENSG00000231925
TAP binding protein
Low tissue specificity
Detected in all
TAPBPL
ENSSSCG00000000704
ENSG00000139192
TAP binding protein like
Low tissue specificity
Detected in all
TAPT1
ENSSSCG00000021828
ENSG00000169762
Transmembrane anterior posterior transformation 1
Low tissue specificity
Detected in all
TARBP1
ENSSSCG00000010160
ENSG00000059588
TAR (HIV-1) RNA binding protein 1
Low tissue specificity
Detected in all
TARBP2
ENSSSCG00000000276
ENSG00000139546
TARBP2, RISC loading complex RNA binding subunit
Low tissue specificity
Detected in all
TARS
ENSSSCG00000016817
ENSG00000113407
Threonyl-tRNA synthetase
Low tissue specificity
Detected in all
TARS2
ENSSSCG00000026395
ENSG00000143374
Threonyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
TARSL2
ENSSSCG00000005781
ENSG00000185418
Threonyl-tRNA synthetase like 2
Tissue enhanced
Detected in all
liver:
40.6
TAS1R1
ENSSSCG00000003382
ENSG00000173662
Taste 1 receptor member 1
Tissue enhanced
Detected in many
choroid plexus:
12.1
fallopian tube:
12.4
TAS1R3
ENSSSCG00000003341
ENSG00000169962
Taste receptor type 1 member 3 precursor
Tissue enhanced
Detected in many
salivary gland:
23.8
TAS2R38
ENSSSCG00000031100
ENSG00000257138
Taste 2 receptor member 38
Low tissue specificity
Detected in many
TAS2R39
ENSSSCG00000021954
ENSG00000236398
Taste 2 receptor member 39
Tissue enriched
Detected in many
liver:
28.5
TAS2R4
ENSSSCG00000021525
ENSG00000127364
Taste 2 receptor member 4
Low tissue specificity
Detected in many
TAS2R40
ENSSSCG00000016467
ENSG00000221937
Taste 2 receptor member 40
Group enriched
Detected in many
heart:
9.7
liver:
36.1
TAS2R42
ENSSSCG00000032322
ENSG00000186136
Taste 2 receptor member 42
Tissue enhanced
Detected in many
lymphoid tissue:
24.2
TAS2R7
ENSSSCG00000035471
ENSG00000121377
Taste 2 receptor member 7
Tissue enhanced
Detected in many
lymphoid tissue:
9.0
TASP1
ENSSSCG00000007074
ENSG00000089123
Taspase 1
Low tissue specificity
Detected in all
TATDN1
ENSSSCG00000030603
ENSG00000147687
Putative deoxyribonuclease TATDN1
Low tissue specificity
Detected in all
TATDN3
ENSSSCG00000015592
ENSG00000203705
TatD DNase domain containing 3
Low tissue specificity
Detected in all
TAX1BP1
ENSSSCG00000016692
ENSG00000106052
Tax1 binding protein 1
Low tissue specificity
Detected in all
TAX1BP3
ENSSSCG00000017866
ENSG00000213977
Tax1 binding protein 3
Low tissue specificity
Detected in all
TAZ
ENSSSCG00000039655
ENSG00000102125
Tafazzin
Low tissue specificity
Detected in all
TBC1D1
ENSSSCG00000028983
ENSG00000065882
TBC1 domain family member 1
Low tissue specificity
Detected in all
TBC1D10B
ENSSSCG00000007798
ENSG00000169221
TBC1 domain family member 10B
Low tissue specificity
Detected in all
TBC1D10C
ENSSSCG00000012912
ENSG00000175463
TBC1 domain family member 10C
Tissue enhanced
Detected in all
lymphoid tissue:
40.5
stomach:
22.2
TBC1D12
ENSSSCG00000010485
ENSG00000108239
TBC1 domain family member 12
Low tissue specificity
Detected in all
TBC1D13
ENSSSCG00000005660
ENSG00000107021
TBC1 domain family member 13
Low tissue specificity
Detected in all
TBC1D15
ENSSSCG00000000512
ENSG00000121749
TBC1 domain family member 15
Low tissue specificity
Detected in all
TBC1D16
ENSSSCG00000017159
ENSG00000167291
TBC1 domain family member 16
Low tissue specificity
Detected in many
TBC1D17
ENSSSCG00000003193
ENSG00000104946
TBC1 domain family member 17
Low tissue specificity
Detected in all
TBC1D19
ENSSSCG00000008761
ENSG00000109680
TBC1 domain family member 19
Tissue enhanced
Detected in all
lens:
29.6
lymphoid tissue:
27.8
TBC1D2
ENSSSCG00000005376
ENSG00000095383
TBC1 domain family member 2
Low tissue specificity
Detected in all
TBC1D20
ENSSSCG00000036081
ENSG00000125875
TBC1 domain family member 20
Tissue enhanced
Detected in all
lymphoid tissue:
50.1
TBC1D21
ENSSSCG00000001915
ENSG00000167139
TBC1 domain family member 21
Tissue enriched
Detected in some
testis:
36.9
TBC1D22A
ENSSSCG00000000955
ENSG00000054611
TBC1 domain family member 22A
Low tissue specificity
Detected in all
TBC1D22B
ENSSSCG00000001577
ENSG00000065491
TBC1 domain family member 22B
Low tissue specificity
Detected in all
TBC1D23
ENSSSCG00000030486
ENSG00000036054
TBC1 domain family member 23
Low tissue specificity
Detected in all
TBC1D25
ENSSSCG00000040599
ENSG00000068354
TBC1 domain family member 25
Low tissue specificity
Detected in all
TBC1D2B
ENSSSCG00000027477
ENSG00000167202
TBC1 domain family member 2B
Low tissue specificity
Detected in all
TBC1D30
ENSSSCG00000023788
ENSG00000111490
TBC1 domain family member 30
Low tissue specificity
Detected in all
TBC1D31
ENSSSCG00000005987
ENSG00000156787
TBC1 domain family member 31
Low tissue specificity
Detected in all
TBC1D32
ENSSSCG00000004242
ENSG00000146350
TBC1 domain family member 32
Tissue enhanced
Detected in all
brain:
30.9
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