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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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15887 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PTPRM
ENSSSCG00000028805
ENSG00000173482
Protein tyrosine phosphatase, receptor type M
Low tissue specificity
Detected in all
PTPRR
ENSSSCG00000025969
ENSG00000153233
Protein tyrosine phosphatase, receptor type R
Tissue enhanced
Detected in many
retina:
40.8
PTPRS
ENSSSCG00000028612
ENSG00000105426
Protein tyrosine phosphatase, receptor type S
Low tissue specificity
Detected in all
PTPRU
ENSSSCG00000003590
ENSG00000060656
Protein tyrosine phosphatase, receptor type U
Tissue enriched
Detected in many
lens:
75.6
PTRH1
ENSSSCG00000005615
ENSG00000187024
Probable peptidyl-tRNA hydrolase
Low tissue specificity
Detected in all
PTRH2
ENSSSCG00000017667
ENSG00000141378
Peptidyl-tRNA hydrolase 2
Tissue enhanced
Detected in many
lens:
16.3
PTTG1IP
ENSSSCG00000031249
ENSG00000183255
PTTG1 interacting protein
Low tissue specificity
Detected in all
PTX3
ENSSSCG00000011727
ENSG00000163661
Pentraxin-related protein PTX3 precursor
Group enriched
Detected in many
bone marrow:
36.2
ovary:
88.0
PTX4
ENSSSCG00000037262
ENSG00000251692
Pentraxin 4
Tissue enhanced
Detected in all
epididymis:
51.3
male glands:
34.0
PUF60
ENSSSCG00000038800
ENSG00000179950
Poly(U) binding splicing factor 60
Low tissue specificity
Detected in all
PUM1
ENSSSCG00000003591
ENSG00000134644
Pumilio RNA binding family member 1
Low tissue specificity
Detected in all
PUM2
ENSSSCG00000008600
ENSG00000055917
Pumilio RNA binding family member 2
Low tissue specificity
Detected in all
PUM3
ENSSSCG00000005227
ENSG00000080608
Pumilio RNA binding family member 3
Low tissue specificity
Detected in all
PURB
ENSSSCG00000032464
ENSG00000146676
Purine rich element binding protein B
Low tissue specificity
Detected in all
PURG
ENSSSCG00000038933
ENSG00000172733
Purine rich element binding protein G
Tissue enhanced
Detected in all
pineal gland:
45.6
PUS1
ENSSSCG00000009741
ENSG00000177192
Pseudouridylate synthase 1
Low tissue specificity
Detected in all
PUS3
ENSSSCG00000015222
ENSG00000110060
TRNA pseudouridine(38/39) synthase
Low tissue specificity
Detected in all
PUS7
ENSSSCG00000015428
ENSG00000091127
Pseudouridylate synthase 7 (putative)
Tissue enhanced
Detected in all
choroid plexus:
71.1
PUS7L
ENSSSCG00000000800
ENSG00000129317
Pseudouridylate synthase 7 like
Low tissue specificity
Detected in all
PUSL1
ENSSSCG00000003338
ENSG00000169972
Pseudouridylate synthase-like 1
Low tissue specificity
Detected in all
PVRIG
ENSSSCG00000007656
ENSG00000213413
Transmembrane protein PVRIG precursor
Tissue enhanced
Detected in all
lymphoid tissue:
28.2
stomach:
18.3
PWP1
ENSSSCG00000000161
ENSG00000136045
PWP1 homolog, endonuclein
Low tissue specificity
Detected in all
PWWP2B
ENSSSCG00000023681
ENSG00000171813
PWWP domain containing 2B
Tissue enhanced
Detected in many
stomach:
35.8
PXDC1
ENSSSCG00000025582
ENSG00000168994
PX domain containing 1
Low tissue specificity
Detected in all
PXDN
ENSSSCG00000029570
ENSG00000130508
Peroxidasin
Tissue enhanced
Detected in many
adipose tissue:
32.7
ovary:
33.9
PXK
ENSSSCG00000011474
ENSG00000168297
PX domain containing serine/threonine kinase like
Low tissue specificity
Detected in all
PXMP4
ENSSSCG00000034625
ENSG00000101417
Peroxisomal membrane protein 4
Low tissue specificity
Detected in all
PXN
ENSSSCG00000040546
ENSG00000089159
Paxillin
Low tissue specificity
Detected in all
PXYLP1
ENSSSCG00000011670
ENSG00000155893
2-phosphoxylose phosphatase 1
Tissue enriched
Detected in all
cartilage:
103.9
PYCR1
ENSSSCG00000034723
ENSG00000183010
Pyrroline-5-carboxylate reductase 1
Tissue enhanced
Detected in all
cartilage:
48.7
male glands:
82.7
salivary gland:
47.5
PYCR3
ENSSSCG00000032763
ENSG00000104524
Pyrroline-5-carboxylate reductase 3
Low tissue specificity
Detected in all
PYGB
ENSSSCG00000022815
ENSG00000100994
Glycogen phosphorylase B
Tissue enhanced
Detected in many
cervix:
45.8
heart:
104.4
PYGL
ENSSSCG00000005024
ENSG00000100504
Glycogen phosphorylase, liver form
Tissue enhanced
Detected in all
cornea:
96.8
PYGM
ENSSSCG00000013022
ENSG00000068976
Glycogen phosphorylase, muscle associated
Tissue enriched
Detected in many
skeletal muscle:
418.1
PYGO1
ENSSSCG00000004607
ENSG00000171016
Pygopus family PHD finger 1
Tissue enhanced
Detected in all
skeletal muscle:
55.6
PYM1
ENSSSCG00000040825
ENSG00000170473
PYM homolog 1, exon junction complex associated factor
Low tissue specificity
Detected in all
PYROXD1
ENSSSCG00000000583
ENSG00000121350
Pyridine nucleotide-disulphide oxidoreductase domain 1
Low tissue specificity
Detected in all
PYROXD2
ENSSSCG00000010533
ENSG00000119943
Pyridine nucleotide-disulphide oxidoreductase domain 2
Tissue enhanced
Detected in many
kidney:
41.0
QARS
ENSSSCG00000032031
ENSG00000172053
Glutaminyl-tRNA synthetase
Low tissue specificity
Detected in all
QDPR
ENSSSCG00000034811
ENSG00000151552
Dihydropteridine reductase
Tissue enhanced
Detected in all
brain:
59.6
QKI
ENSSSCG00000004029
ENSG00000112531
Protein quaking
Tissue enhanced
Detected in all
brain:
149.4
vagus nerve:
96.4
QPCT
ENSSSCG00000008491
ENSG00000115828
Glutaminyl-peptide cyclotransferase
Tissue enhanced
Detected in many
adrenal gland:
70.4
pituitary gland:
28.7
QPCTL
ENSSSCG00000032819
ENSG00000011478
Glutaminyl-peptide cyclotransferase-like protein
Low tissue specificity
Detected in all
QRFP
ENSSSCG00000005705
ENSG00000188710
Pyroglutamylated RFamide peptide
Tissue enhanced
Detected in all
cervix:
37.5
QRICH1
ENSSSCG00000011373
ENSG00000198218
Glutamine rich 1
Low tissue specificity
Detected in all
QRSL1
ENSSSCG00000004374
ENSG00000130348
Glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
Low tissue specificity
Detected in all
QSER1
ENSSSCG00000013314
ENSG00000060749
Glutamine and serine rich 1
Low tissue specificity
Detected in all
QSOX1
ENSSSCG00000015535
ENSG00000116260
Quiescin sulfhydryl oxidase 1
Tissue enhanced
Detected in all
liver:
66.8
male glands:
91.5
stomach:
77.5
QSOX2
ENSSSCG00000040163
ENSG00000165661
Quiescin sulfhydryl oxidase 2
Low tissue specificity
Detected in all
QTRT1
ENSSSCG00000013637
ENSG00000213339
Queuine tRNA-ribosyltransferase catalytic subunit 1
Low tissue specificity
Detected in all
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