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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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18358 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TRAPPC6A
ENSSSCG00000035374
ENSG00000007255
Trafficking protein particle complex 6A
Low tissue specificity
Detected in all
TRAPPC6B
ENSSSCG00000004986
ENSG00000182400
Trafficking protein particle complex 6B
Low tissue specificity
Detected in all
TRAPPC8
ENSSSCG00000003728
ENSG00000153339
Trafficking protein particle complex 8
Low tissue specificity
Detected in all
TRAV3
ENSSSCG00000032592
T cell receptor alpha variable 3 (gene/pseudogene)
Low tissue specificity
Detected in all
TRAV6
ENSSSCG00000036635
T cell receptor alpha variable 6
Low tissue specificity
Detected in all
TRDC
ENSSSCG00000022512
T cell receptor delta constant
Tissue enriched
Detected in many
lymphoid tissue:
67.6
TRDMT1
ENSSSCG00000021309
ENSG00000107614
TRNA (cytosine(38)-C(5))-methyltransferase
Low tissue specificity
Detected in all
TREH
ENSSSCG00000028204
ENSG00000118094
Trehalase
Group enriched
Detected in many
gallbladder:
26.4
kidney:
11.6
small intestine:
20.8
TREM1
ENSSSCG00000033251
ENSG00000124731
Triggering receptor expressed on myeloid cells 1
Low tissue specificity
Detected in all
TREM2
ENSSSCG00000039270
ENSG00000095970
Triggering receptor expressed on myeloid cells 2 precursor
Tissue enhanced
Detected in all
brain:
20.4
TRERF1
ENSSSCG00000001639
ENSG00000124496
Transcriptional regulating factor 1
Tissue enhanced
Detected in all
skin:
39.0
TREX1
ENSSSCG00000011358
ENSG00000213689
Three prime repair exonuclease 1
Tissue enhanced
Detected in all
lens:
42.0
TRH
ENSSSCG00000011596
ENSG00000170893
Thyrotropin-releasing hormone precursor
Tissue enhanced
Detected in some
brain:
30.5
gallbladder:
9.6
upper respiratory system:
7.0
TRHDE
ENSSSCG00000000515
ENSG00000072657
Thyrotropin releasing hormone degrading enzyme
Tissue enhanced
Detected in many
brain:
21.5
liver:
14.8
thyroid gland:
30.7
TRHR
ENSSSCG00000040768
ENSG00000174417
Thyrotropin releasing hormone receptor
Tissue enhanced
Detected in all
pituitary gland:
24.4
TRIB1
ENSSSCG00000038500
ENSG00000173334
Tribbles pseudokinase 1
Low tissue specificity
Detected in all
TRIB2
ENSSSCG00000039080
ENSG00000071575
Tribbles pseudokinase 2
Low tissue specificity
Detected in all
TRIB3
ENSSSCG00000039862
ENSG00000101255
Tribbles pseudokinase 3
Tissue enhanced
Detected in all
ovary:
34.5
TRIL
ENSSSCG00000016689
ENSG00000255690
TLR4 interactor with leucine rich repeats
Low tissue specificity
Detected in many
TRIM10
ENSSSCG00000001234
ENSG00000204613
Tripartite motif-containing protein 10
Tissue enhanced
Detected in many
dura mater:
8.6
male glands:
13.1
testis:
9.4
TRIM11
ENSSSCG00000035985
ENSG00000154370
Tripartite motif containing 11
Low tissue specificity
Detected in all
TRIM13
ENSSSCG00000009389
ENSG00000204977
Tripartite motif containing 13
Low tissue specificity
Detected in all
TRIM14
ENSSSCG00000033222
ENSG00000106785
Tripartite motif containing 14
Low tissue specificity
Detected in all
TRIM15
ENSSSCG00000001235
ENSG00000204610
Tripartite motif-containing protein 15
Tissue enhanced
Detected in all
large intestine:
23.6
male glands:
26.6
TRIM17
ENSSSCG00000014000
ENSG00000162931
Tripartite motif containing 17
Tissue enriched
Detected in some
testis:
50.6
TRIM2
ENSSSCG00000029200
ENSG00000109654
Tripartite motif containing 2
Low tissue specificity
Detected in all
TRIM21
ENSSSCG00000014780
ENSG00000132109
E3 ubiquitin-protein ligase TRIM21
Low tissue specificity
Detected in all
TRIM23
ENSSSCG00000016948
ENSG00000113595
Tripartite motif containing 23
Low tissue specificity
Detected in all
TRIM24
ENSSSCG00000016518
ENSG00000122779
Tripartite motif containing 24
Tissue enhanced
Detected in all
epididymis:
77.8
TRIM25
ENSSSCG00000017614
ENSG00000121060
Tripartite motif containing 25
Low tissue specificity
Detected in many
TRIM26
ENSSSCG00000001233
ENSG00000234127
Tripartite motif-containing protein 26
Low tissue specificity
Detected in all
TRIM27
ENSSSCG00000001219
ENSG00000204713
Tripartite motif containing 27
Tissue enriched
Detected in all
male glands:
85.0
TRIM28
ENSSSCG00000037920
ENSG00000130726
Tripartite motif containing 28
Tissue enhanced
Detected in all
testis:
76.0
TRIM29
ENSSSCG00000015126
ENSG00000137699
Tripartite motif containing 29
Tissue enhanced
Detected in many
cornea:
65.8
mouth:
53.2
skin:
53.0
TRIM3
ENSSSCG00000014625
ENSG00000110171
Tripartite motif containing 3
Low tissue specificity
Detected in all
TRIM32
ENSSSCG00000005501
ENSG00000119401
Tripartite motif containing 32
Tissue enhanced
Detected in all
brain:
30.2
TRIM33
ENSSSCG00000006757
ENSG00000197323
Tripartite motif containing 33
Low tissue specificity
Detected in all
TRIM35
ENSSSCG00000033325
ENSG00000104228
Tripartite motif containing 35
Low tissue specificity
Detected in all
TRIM36
ENSSSCG00000014214
ENSG00000152503
Tripartite motif containing 36
Tissue enhanced
Detected in many
brain:
18.7
cervix:
24.4
testis:
89.9
TRIM37
ENSSSCG00000023727
ENSG00000108395
Tripartite motif containing 37
Low tissue specificity
Detected in all
TRIM38
ENSSSCG00000035153
ENSG00000112343
Tripartite motif containing 38
Tissue enhanced
Detected in all
lymphoid tissue:
26.1
TRIM4
ENSSSCG00000007637
ENSG00000146833
Tripartite motif containing 4
Low tissue specificity
Detected in all
TRIM40
ENSSSCG00000001236
ENSG00000204614
Tripartite motif-containing protein 40
Tissue enhanced
Detected in all
large intestine:
31.9
small intestine:
22.1
TRIM41
ENSSSCG00000032836
ENSG00000146063
Tripartite motif containing 41
Low tissue specificity
Detected in all
TRIM44
ENSSSCG00000013295
ENSG00000166326
Tripartite motif containing 44
Low tissue specificity
Detected in all
TRIM45
ENSSSCG00000006732
ENSG00000134253
Tripartite motif containing 45
Low tissue specificity
Detected in all
TRIM46
ENSSSCG00000006526
ENSG00000163462
Tripartite motif containing 46
Tissue enhanced
Detected in many
brain:
16.5
TRIM47
ENSSSCG00000017199
ENSG00000132481
Tripartite motif containing 47
Tissue enhanced
Detected in many
cartilage:
72.7
synovial tissue:
40.9
TRIM5
ENSSSCG00000014670
ENSG00000132256
Tripartite motif protein TRIM5
Low tissue specificity
Detected in many
TRIM50
ENSSSCG00000007703
ENSG00000146755
E3 ubiquitin-protein ligase TRIM50
Tissue enhanced
Detected in some
brain:
4.0
kidney:
15.2
skin:
6.7
stomach:
8.7
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