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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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18358 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TGFBR1
ENSSSCG00000005382
ENSG00000106799
TGF-beta receptor type-1 precursor
Low tissue specificity
Detected in all
TGFBR2
ENSSSCG00000011226
ENSG00000163513
Transforming growth factor beta receptor 2
Tissue enhanced
Detected in many
cartilage:
107.0
TGFBR3
ENSSSCG00000006911
ENSG00000069702
Transforming growth factor beta receptor type 3 precursor
Low tissue specificity
Detected in all
TGFBR3L
ENSSSCG00000040598
ENSG00000260001
Transforming growth factor beta receptor 3 like
Tissue enriched
Detected in many
pituitary gland:
64.9
TGFBRAP1
ENSSSCG00000024636
ENSG00000135966
Transforming growth factor beta receptor associated protein 1
Low tissue specificity
Detected in all
TGIF1
ENSSSCG00000024174
ENSG00000177426
Homeobox protein TGIF1 isoform c
Low tissue specificity
Detected in many
TGIF2
ENSSSCG00000036002
ENSG00000118707
TGFB induced factor homeobox 2
Low tissue specificity
Detected in all
TGIF2-C20orf24
ENSSSCG00000039201
ENSG00000259399
TGIF2-C20orf24 readthrough
Low tissue specificity
Detected in all
TGM2
ENSSSCG00000023522
ENSG00000198959
Transglutaminase 2
Low tissue specificity
Detected in many
TGM5
ENSSSCG00000004713
ENSG00000104055
Transglutaminase 5
Tissue enhanced
Detected in some
lens:
31.9
ovary:
20.4
TGM6
ENSSSCG00000034528
ENSG00000166948
Transglutaminase 6
Tissue enriched
Detected in some
skin:
19.3
TGS1
ENSSSCG00000006251
ENSG00000137574
Trimethylguanosine synthase 1
Low tissue specificity
Detected in all
TH
ENSSSCG00000039767
ENSG00000180176
Tyrosine hydroxylase
Group enriched
Detected in some
adrenal gland:
80.4
brain:
136.9
THADA
ENSSSCG00000008459
ENSG00000115970
THADA, armadillo repeat containing
Low tissue specificity
Detected in all
THAP1
ENSSSCG00000039969
ENSG00000131931
THAP domain containing 1
Low tissue specificity
Detected in all
THAP11
ENSSSCG00000002769
ENSG00000168286
THAP domain-containing protein 11
Low tissue specificity
Detected in all
THAP2
ENSSSCG00000021270
ENSG00000173451
THAP domain containing 2
Low tissue specificity
Detected in all
THAP3
ENSSSCG00000036876
ENSG00000041988
THAP domain containing 3
Low tissue specificity
Detected in all
THAP4
ENSSSCG00000016374
ENSG00000176946
THAP domain containing 4
Low tissue specificity
Detected in all
THAP5
ENSSSCG00000038158
ENSG00000177683
THAP domain containing 5
Low tissue specificity
Detected in all
THAP6
ENSSSCG00000029348
ENSG00000174796
THAP domain containing 6
Tissue enhanced
Detected in all
lens:
36.5
THAP7
ENSSSCG00000033301
ENSG00000184436
THAP domain containing 7
Low tissue specificity
Detected in all
THAP9
ENSSSCG00000009243
ENSG00000168152
THAP domain containing 9
Low tissue specificity
Detected in all
THBD
ENSSSCG00000007115
ENSG00000178726
Thrombomodulin precursor
Tissue enhanced
Detected in many
mesothelial tissue:
74.0
THBS1
ENSSSCG00000004789
ENSG00000137801
Thrombospondin-1 precursor
Tissue enhanced
Detected in many
male glands:
224.8
ovary:
175.2
THBS2
ENSSSCG00000004012
ENSG00000186340
Thrombospondin 2
Tissue enhanced
Detected in many
cornea:
56.1
dura mater:
89.5
THBS3
ENSSSCG00000006524
ENSG00000169231
Thrombospondin 3
Tissue enriched
Detected in many
cartilage:
68.7
THBS4
ENSSSCG00000014117
ENSG00000113296
Thrombospondin 4
Tissue enhanced
Detected in many
bone marrow:
79.3
cornea:
86.9
smooth muscle:
78.7
synovial tissue:
82.6
THEGL
ENSSSCG00000032353
ENSG00000249693
Theg spermatid protein like
Tissue enriched
Detected in some
testis:
57.5
THEM5
ENSSSCG00000006614
ENSG00000196407
Thioesterase superfamily member 5
Group enriched
Detected in some
cornea:
49.6
epididymis:
13.1
male glands:
27.5
mouth:
27.3
skin:
51.8
THEM6
ENSSSCG00000032063
ENSG00000130193
Thioesterase superfamily member 6
Tissue enriched
Detected in some
brain:
14.1
THEMIS2
ENSSSCG00000003584
ENSG00000130775
Thymocyte selection associated family member 2
Tissue enhanced
Detected in all
lymphoid tissue:
43.6
THG1L
ENSSSCG00000036047
ENSG00000113272
TRNA-histidine guanylyltransferase 1 like
Low tissue specificity
Detected in all
THNSL1
ENSSSCG00000011071
ENSG00000185875
Threonine synthase like 1
Low tissue specificity
Detected in all
THOC1
ENSSSCG00000025653
ENSG00000079134
THO complex 1
Low tissue specificity
Detected in all
THOC2
ENSSSCG00000012639
ENSG00000125676
THO complex 2
Low tissue specificity
Detected in all
THOC3
ENSSSCG00000014061
ENSG00000051596
THO complex 3
Low tissue specificity
Detected in all
THOC5
ENSSSCG00000009988
ENSG00000100296
THO complex 5
Low tissue specificity
Detected in all
THOC6
ENSSSCG00000023315
ENSG00000131652
THO complex subunit 6 homolog
Low tissue specificity
Detected in all
THOC7
ENSSSCG00000011491
ENSG00000163634
THO complex 7
Low tissue specificity
Detected in all
THOP1
ENSSSCG00000013468
ENSG00000172009
Thimet oligopeptidase
Tissue enhanced
Detected in all
liver:
41.3
THPO
ENSSSCG00000023909
ENSG00000090534
Thrombopoietin
Tissue enhanced
Detected in all
liver:
35.8
THRA
ENSSSCG00000035969
ENSG00000126351
Thyroid hormone receptor alpha
Low tissue specificity
Detected in all
THRAP3
ENSSSCG00000029954
ENSG00000054118
Thyroid hormone receptor associated protein 3
Low tissue specificity
Detected in all
THRB
ENSSSCG00000036033
ENSG00000151090
Thyroid hormone receptor beta
Low tissue specificity
Detected in many
THRSP
ENSSSCG00000033822
ENSG00000151365
Thyroid hormone-inducible hepatic protein
Tissue enhanced
Detected in all
adipose tissue:
93.0
aorta:
76.3
bone marrow:
60.3
THSD1
ENSSSCG00000009377
ENSG00000136114
Thrombospondin type 1 domain containing 1
Low tissue specificity
Detected in many
THSD4
ENSSSCG00000004980
ENSG00000187720
Thrombospondin type 1 domain containing 4
Tissue enhanced
Detected in all
dura mater:
57.7
THSD7A
ENSSSCG00000015350
ENSG00000005108
Thrombospondin type 1 domain containing 7A
Tissue enhanced
Detected in many
brain:
39.6
THSD7B
ENSSSCG00000040172
ENSG00000144229
Thrombospondin type 1 domain containing 7B
Tissue enhanced
Detected in many
pineal gland:
15.1
pituitary gland:
22.7
retina:
14.6
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