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Human disease related genes
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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18358 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ST7
ENSSSCG00000016629
ENSG00000004866
Suppressor of tumorigenicity 7 protein
Low tissue specificity
Detected in all
ST7L
ENSSSCG00000006779
ENSG00000007341
Suppression of tumorigenicity 7 like
Low tissue specificity
Detected in all
ST8SIA1
ENSSSCG00000031329
ENSG00000111728
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
Tissue enhanced
Detected in many
brain:
18.3
lymphoid tissue:
15.9
ST8SIA2
ENSSSCG00000039271
ENSG00000140557
Alpha-2,8-sialyltransferase 8B precursor
Tissue enhanced
Detected in many
mouth:
9.8
ST8SIA3
ENSSSCG00000038971
ENSG00000177511
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
Tissue enhanced
Detected in some
brain:
45.8
pituitary gland:
18.1
retina:
8.7
ST8SIA4
ENSSSCG00000035539
ENSG00000113532
CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase precursor
Tissue enhanced
Detected in many
lymphoid tissue:
30.4
ST8SIA5
ENSSSCG00000032053
ENSG00000101638
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
Tissue enhanced
Detected in all
adrenal gland:
26.0
brain:
43.6
choroid plexus:
29.2
ST8SIA6
ENSSSCG00000011034
ENSG00000148488
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6
Tissue enhanced
Detected in some
epididymis:
36.9
fallopian tube:
13.4
pituitary gland:
11.4
STAB1
ENSSSCG00000011443
ENSG00000010327
Stabilin 1
Tissue enhanced
Detected in many
synovial tissue:
60.8
STAC
ENSSSCG00000023085
ENSG00000144681
SH3 and cysteine rich domain
Tissue enhanced
Detected in many
ductus deferens:
34.2
STAC2
ENSSSCG00000017508
ENSG00000141750
SH3 and cysteine rich domain 2
Tissue enhanced
Detected in many
breast:
99.5
male glands:
26.4
STAG1
ENSSSCG00000011652
ENSG00000118007
Stromal antigen 1
Low tissue specificity
Detected in all
STAG2
ENSSSCG00000012642
ENSG00000101972
Stromal antigen 2
Low tissue specificity
Detected in all
STAG3
ENSSSCG00000007650
ENSG00000066923
Stromal antigen 3
Tissue enriched
Detected in some
testis:
83.3
STAM
ENSSSCG00000011036
ENSG00000136738
Signal transducing adaptor molecule
Low tissue specificity
Detected in all
STAM2
ENSSSCG00000016399
ENSG00000115145
Signal transducing adaptor molecule 2
Low tissue specificity
Detected in all
STAMBP
ENSSSCG00000008300
ENSG00000124356
STAM binding protein
Low tissue specificity
Detected in all
STAMBPL1
ENSSSCG00000010446
ENSG00000138134
AMSH-like protease
Tissue enriched
Detected in many
lens:
83.6
STAP1
ENSSSCG00000008923
ENSG00000035720
Signal transducing adaptor family member 1
Tissue enhanced
Detected in many
lymphoid tissue:
27.0
STAP2
ENSSSCG00000013506
ENSG00000178078
Signal transducing adaptor family member 2
Tissue enhanced
Detected in many
male glands:
21.4
small intestine:
30.3
STARD10
ENSSSCG00000014818
ENSG00000214530
PCTP-like protein
Tissue enhanced
Detected in all
liver:
54.9
stomach:
74.4
STARD13
ENSSSCG00000009348
ENSG00000133121
StAR related lipid transfer domain containing 13
Tissue enhanced
Detected in all
cartilage:
61.3
STARD3
ENSSSCG00000017499
ENSG00000131748
StAR-related lipid transfer protein 3
Low tissue specificity
Detected in all
STARD3NL
ENSSSCG00000024028
ENSG00000010270
MLN64 N-terminal domain homolog
Low tissue specificity
Detected in all
STARD4
ENSSSCG00000031518
ENSG00000164211
StAR-related lipid transfer protein 4
Tissue enhanced
Detected in many
liver:
30.0
ovary:
25.0
STARD5
ENSSSCG00000001788
ENSG00000172345
StAR related lipid transfer domain containing 5
Tissue enhanced
Detected in many
skin:
20.5
STARD6
ENSSSCG00000004530
ENSG00000174448
StAR related lipid transfer domain containing 6
Tissue enriched
Detected in some
testis:
57.3
STARD7
ENSSSCG00000008132
ENSG00000084090
StAR related lipid transfer domain containing 7
Tissue enhanced
Detected in all
heart:
43.2
retina:
36.7
STARD8
ENSSSCG00000012828
ENSG00000130052
StAR related lipid transfer domain containing 8
Tissue enhanced
Detected in many
kidney:
39.0
lymphoid tissue:
32.9
STARD9
ENSSSCG00000022039
ENSG00000159433
StAR related lipid transfer domain containing 9
Tissue enhanced
Detected in all
vagus nerve:
46.1
STAT1
ENSSSCG00000016057
ENSG00000115415
Signal transducer and activator of transcription 1
Low tissue specificity
Detected in all
STAT2
ENSSSCG00000000396
ENSG00000170581
Signal transducer and activator of transcription 2
Tissue enhanced
Detected in all
liver:
75.2
STAT3
ENSSSCG00000017403
ENSG00000168610
Signal transducer and activator of transcription 3
Low tissue specificity
Detected in all
STAT4
ENSSSCG00000016059
ENSG00000138378
Signal transducer and activator of transcription 4
Tissue enriched
Detected in some
testis:
72.7
STAT5A
ENSSSCG00000017402
ENSG00000126561
Signal transducer and activator of transcription 5A
Low tissue specificity
Detected in all
STAT5B
ENSSSCG00000017406
ENSG00000173757
Signal transducer and activator of transcription 5B
Low tissue specificity
Detected in all
STAT6
ENSSSCG00000040435
ENSG00000166888
Signal transducer and activator of transcription 6 isoform 2
Low tissue specificity
Detected in many
STAU1
ENSSSCG00000027444
ENSG00000124214
Staufen double-stranded RNA binding protein 1
Low tissue specificity
Detected in all
STC1
ENSSSCG00000009642
ENSG00000159167
Stanniocalcin-1 precursor
Tissue enhanced
Detected in all
mesothelial tissue:
60.3
STC2
ENSSSCG00000016983
ENSG00000113739
Stanniocalcin-2 precursor
Tissue enhanced
Detected in all
cartilage:
31.8
STEAP1
ENSSSCG00000015301
ENSG00000164647
Metalloreductase STEAP1
Tissue enhanced
Detected in many
choroid plexus:
15.9
STEAP2
ENSSSCG00000015302
ENSG00000157214
STEAP2 metalloreductase
Low tissue specificity
Detected in all
STEAP3
ENSSSCG00000029304
ENSG00000115107
STEAP3 metalloreductase
Tissue enhanced
Detected in many
liver:
45.4
STEAP4
ENSSSCG00000015299
ENSG00000127954
Metalloreductase STEAP4
Tissue enhanced
Detected in many
cornea:
40.6
STIL
ENSSSCG00000003888
ENSG00000123473
STIL, centriolar assembly protein
Low tissue specificity
Detected in all
STIM2
ENSSSCG00000008762
ENSG00000109689
Stromal interaction molecule 2
Low tissue specificity
Detected in all
STIP1
ENSSSCG00000021620
ENSG00000168439
Stress induced phosphoprotein 1
Tissue enhanced
Detected in all
lens:
99.6
STK10
ENSSSCG00000022478
ENSG00000072786
Serine/threonine kinase 10
Low tissue specificity
Detected in all
STK11
ENSSSCG00000013429
ENSG00000118046
Serine/threonine kinase 11
Low tissue specificity
Detected in all
STK11IP
ENSSSCG00000032964
ENSG00000144589
Serine/threonine kinase 11 interacting protein
Low tissue specificity
Detected in all
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