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Chromosome
1
2
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8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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18358 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
POMT2
ENSSSCG00000002397
ENSG00000009830
Protein O-mannosyltransferase 2
Low tissue specificity
Detected in all
PON1
ENSSSCG00000015332
ENSG00000005421
Serum paraoxonase/arylesterase 1 precursor
Group enriched
Detected in some
kidney:
41.1
liver:
90.4
PON2
ENSSSCG00000015331
ENSG00000105854
Serum paraoxonase/arylesterase 2 precursor
Tissue enhanced
Detected in many
lens:
39.3
POP1
ENSSSCG00000006078
ENSG00000104356
POP1 homolog, ribonuclease P/MRP subunit
Low tissue specificity
Detected in all
POP4
ENSSSCG00000002854
ENSG00000105171
POP4 homolog, ribonuclease P/MRP subunit
Low tissue specificity
Detected in all
POP5
ENSSSCG00000009912
ENSG00000167272
POP5 homolog, ribonuclease P/MRP subunit
Low tissue specificity
Detected in all
POP7
ENSSSCG00000007672
ENSG00000172336
POP7 homolog, ribonuclease P/MRP subunit
Low tissue specificity
Detected in all
POPDC3
ENSSSCG00000004367
ENSG00000132429
Popeye domain-containing protein 3
Tissue enhanced
Detected in all
heart:
22.6
skeletal muscle:
39.2
POR
ENSSSCG00000038320
ENSG00000127948
NADPH--cytochrome P450 reductase
Low tissue specificity
Detected in all
PORCN
ENSSSCG00000024793
ENSG00000102312
Porcupine O-acyltransferase
Low tissue specificity
Detected in all
POSTN
ENSSSCG00000009361
ENSG00000133110
Periostin isoform 1 precursor
Tissue enhanced
Detected in many
dura mater:
121.6
gallbladder:
82.5
mesothelial tissue:
89.0
upper respiratory system:
88.5
POU1F1
ENSSSCG00000011996
ENSG00000064835
Pituitary-specific positive transcription factor 1
Tissue enriched
Detected in many
pituitary gland:
76.5
POU2F1
ENSSSCG00000006310
ENSG00000143190
POU domain, class 2, transcription factor 1
Low tissue specificity
Detected in all
POU2F2
ENSSSCG00000037132
ENSG00000028277
POU domain, class 2, transcription factor 2
Tissue enhanced
Detected in many
lymphoid tissue:
56.2
stomach:
25.0
upper respiratory system:
25.1
POU3F1
ENSSSCG00000003646
ENSG00000185668
POU class 3 homeobox 1
Tissue enhanced
Detected in some
skin:
10.9
vagus nerve:
36.6
POU3F2
ENSSSCG00000004346
ENSG00000184486
POU class 3 homeobox 2
Group enriched
Detected in some
brain:
9.1
vagus nerve:
22.7
POU3F3
ENSSSCG00000022096
ENSG00000198914
POU class 3 homeobox 3
Tissue enhanced
Detected in some
epididymis:
29.3
kidney:
28.5
male glands:
66.6
POU3F4
ENSSSCG00000012454
ENSG00000196767
POU class 3 homeobox 4
Tissue enriched
Detected in some
brain:
10.6
POU4F1
ENSSSCG00000025334
ENSG00000152192
POU class 4 homeobox 1
Tissue enhanced
Detected in some
brain:
11.8
gallbladder:
7.8
retina:
15.2
POU4F2
ENSSSCG00000026015
ENSG00000151615
POU class 4 homeobox 2
Tissue enhanced
Detected in many
cartilage:
19.0
POU4F3
ENSSSCG00000014412
ENSG00000091010
POU class 4 homeobox 3
Tissue enhanced
Detected in some
brain:
1.8
mouth:
2.1
retina:
8.0
POU5F2
ENSSSCG00000036467
ENSG00000248483
POU domain class 5, transcription factor 2
Low tissue specificity
Detected in all
POU6F2
ENSSSCG00000037764
ENSG00000106536
POU class 6 homeobox 2
Tissue enhanced
Detected in many
cornea:
20.3
testis:
20.1
PP2D1
ENSSSCG00000027327
ENSG00000183977
Protein phosphatase 2C like domain containing 1
Tissue enriched
Detected in all
testis:
46.1
PPA1
ENSSSCG00000010261
ENSG00000180817
Pyrophosphatase (inorganic) 1
Tissue enhanced
Detected in many
brain:
55.9
pineal gland:
64.9
PPA2
ENSSSCG00000022788
ENSG00000138777
Pyrophosphatase (inorganic) 2
Low tissue specificity
Detected in all
PPAN
ENSSSCG00000013662
ENSG00000130810
Suppressor of SWI4 1 homolog
Low tissue specificity
Detected in all
PPARA
ENSSSCG00000000006
ENSG00000186951
Peroxisome proliferator-activated receptor alpha
Tissue enhanced
Detected in all
kidney:
45.2
liver:
68.3
PPARD
ENSSSCG00000001539
ENSG00000112033
Peroxisome proliferator-activated receptor delta
Tissue enhanced
Detected in all
stomach:
76.6
PPARGC1A
ENSSSCG00000029275
ENSG00000109819
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha
Tissue enhanced
Detected in many
kidney:
43.3
male glands:
65.2
salivary gland:
35.2
PPARGC1B
ENSSSCG00000014437
ENSG00000155846
PPARG coactivator 1 beta
Tissue enhanced
Detected in many
stomach:
41.6
PPAT
ENSSSCG00000008902
ENSG00000128059
Phosphoribosyl pyrophosphate amidotransferase
Low tissue specificity
Detected in all
PPBP
ENSSSCG00000037579
ENSG00000163736
Platelet basic protein
Low tissue specificity
Detected in all
PPCDC
ENSSSCG00000027478
ENSG00000138621
Phosphopantothenoylcysteine decarboxylase
Low tissue specificity
Detected in all
PPEF1
ENSSSCG00000030274
ENSG00000086717
Protein phosphatase with EF-hand domain 1
Group enriched
Detected in many
brain:
37.4
testis:
15.5
PPFIA1
ENSSSCG00000037451
ENSG00000131626
PTPRF interacting protein alpha 1
Low tissue specificity
Detected in all
PPFIA2
ENSSSCG00000000940
ENSG00000139220
PTPRF interacting protein alpha 2
Tissue enhanced
Detected in many
brain:
35.6
retina:
25.0
PPFIA3
ENSSSCG00000022324
ENSG00000177380
PTPRF interacting protein alpha 3
Tissue enhanced
Detected in all
brain:
23.8
PPFIA4
ENSSSCG00000015474
ENSG00000143847
PTPRF interacting protein alpha 4
Group enriched
Detected in many
brain:
41.9
heart:
19.8
PPFIBP1
ENSSSCG00000000549
ENSG00000110841
PPFIA binding protein 1
Low tissue specificity
Detected in all
PPFIBP2
ENSSSCG00000014598
ENSG00000166387
PPFIA binding protein 2
Low tissue specificity
Detected in all
PPHLN1
ENSSSCG00000000793
ENSG00000134283
Periphilin 1
Low tissue specificity
Detected in all
PPIB
ENSSSCG00000034137
ENSG00000166794
Peptidylprolyl isomerase B
Low tissue specificity
Detected in all
PPIC
ENSSSCG00000031128
ENSG00000168938
Peptidylprolyl isomerase C
Low tissue specificity
Detected in all
PPID
ENSSSCG00000008878
ENSG00000171497
Peptidyl-prolyl cis-trans isomerase D
Tissue enhanced
Detected in all
lens:
60.1
PPIF
ENSSSCG00000010330
ENSG00000108179
Peptidylprolyl isomerase F
Tissue enhanced
Detected in all
choroid plexus:
60.1
PPIG
ENSSSCG00000031123
ENSG00000138398
Peptidylprolyl isomerase G
Low tissue specificity
Detected in all
PPIH
ENSSSCG00000003964
ENSG00000171960
Peptidylprolyl isomerase H
Low tissue specificity
Detected in all
PPIL2
ENSSSCG00000010083
ENSG00000100023
Peptidylprolyl isomerase like 2
Low tissue specificity
Detected in all
PPIL3
ENSSSCG00000016096
ENSG00000240344
Peptidylprolyl isomerase like 3
Low tissue specificity
Detected in all
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