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UMAP gene cluster
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Chromosome
1
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9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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18358 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NELL1
ENSSSCG00000039940
ENSG00000165973
Neural EGFL like 1
Tissue enhanced
Detected in many
brain:
22.0
pineal gland:
18.5
NELL2
ENSSSCG00000000802
ENSG00000184613
Neural EGFL like 2
Group enriched
Detected in some
brain:
61.7
pituitary gland:
26.7
NEMF
ENSSSCG00000005011
ENSG00000165525
Nuclear export mediator factor
Low tissue specificity
Detected in all
NEMP1
ENSSSCG00000025542
ENSG00000166881
Nuclear envelope integral membrane protein 1
Low tissue specificity
Detected in all
NENF
ENSSSCG00000038614
ENSG00000117691
Neudesin neurotrophic factor
Low tissue specificity
Detected in all
NEO1
ENSSSCG00000001921
ENSG00000067141
Neogenin 1
Low tissue specificity
Detected in all
NEPRO
ENSSSCG00000011923
ENSG00000163608
Nucleolus and neural progenitor protein
Low tissue specificity
Detected in all
NES
ENSSSCG00000006474
ENSG00000132688
Nestin
Group enriched
Detected in many
heart:
67.3
vagus nerve:
30.4
NET1
ENSSSCG00000023105
ENSG00000173848
Neuroepithelial cell transforming 1
Low tissue specificity
Detected in all
NETO1
ENSSSCG00000027654
ENSG00000166342
Neuropilin and tolloid like 1
Group enriched
Detected in some
brain:
33.5
retina:
18.4
NETO2
ENSSSCG00000026318
ENSG00000171208
Neuropilin and tolloid like 2
Group enriched
Detected in many
brain:
27.2
cartilage:
76.4
NEU1
ENSSSCG00000001418
ENSG00000204386
Sialidase-1 precursor
Low tissue specificity
Detected in all
NEU2
ENSSSCG00000016297
ENSG00000115488
Neuraminidase 2
Tissue enhanced
Detected in some
ductus deferens:
6.8
salivary gland:
8.0
skin:
12.2
NEU3
ENSSSCG00000021638
ENSG00000162139
Neuraminidase 3
Low tissue specificity
Detected in all
NEU4
ENSSSCG00000037090
ENSG00000204099
Neuraminidase 4
Tissue enhanced
Detected in some
brain:
10.1
lymphoid tissue:
4.1
thyroid gland:
5.7
NEURL1
ENSSSCG00000010603
ENSG00000107954
Neuralized E3 ubiquitin protein ligase 1
Tissue enhanced
Detected in many
skeletal muscle:
59.4
NEURL1B
ENSSSCG00000016992
ENSG00000214357
Neuralized E3 ubiquitin protein ligase 1B
Low tissue specificity
Detected in many
NEURL2
ENSSSCG00000007430
ENSG00000124257
Neuralized E3 ubiquitin protein ligase 2
Group enriched
Detected in many
adrenal gland:
29.5
lymphoid tissue:
7.5
NEURL4
ENSSSCG00000017941
ENSG00000215041
Neuralized E3 ubiquitin protein ligase 4
Low tissue specificity
Detected in all
NEUROD1
ENSSSCG00000016011
ENSG00000162992
Neuronal differentiation 1
Group enriched
Detected in some
brain:
90.5
pineal gland:
64.9
retina:
43.6
NEUROD2
ENSSSCG00000033583
ENSG00000171532
Neuronal differentiation 2
Tissue enriched
Detected in some
brain:
43.0
NEUROD4
ENSSSCG00000035778
ENSG00000123307
Neuronal differentiation 4
Tissue enriched
Detected in some
pineal gland:
114.2
NEUROD6
ENSSSCG00000039501
ENSG00000164600
Neuronal differentiation 6
Tissue enriched
Detected in single
brain:
49.9
NEUROG1
ENSSSCG00000014309
ENSG00000181965
Neurogenin 1
Tissue enriched
Detected in some
pineal gland:
35.6
NEUROG2
ENSSSCG00000033479
ENSG00000178403
Neurogenin 2
Group enriched
Detected in some
brain:
18.1
pineal gland:
15.5
retina:
17.5
NEUROG3
ENSSSCG00000034488
ENSG00000122859
Neurogenin 3
Group enriched
Detected in some
large intestine:
5.9
pineal gland:
6.7
small intestine:
7.2
stomach:
7.1
NEXMIF
ENSSSCG00000035689
ENSG00000050030
Neurite extension and migration factor
Tissue enhanced
Detected in some
brain:
14.2
pituitary gland:
8.0
NF1
ENSSSCG00000017748
ENSG00000196712
Neurofibromin 1
Low tissue specificity
Detected in all
NF2
ENSSSCG00000028707
ENSG00000186575
Neurofibromin 2
Low tissue specificity
Detected in all
NFAM1
ENSSSCG00000037425
ENSG00000235568
NFAT activating protein with ITAM motif 1
Tissue enhanced
Detected in many
lung:
16.0
synovial tissue:
13.2
NFASC
ENSSSCG00000022951
ENSG00000163531
Neurofascin
Tissue enhanced
Detected in some
brain:
47.9
pineal gland:
18.3
vagus nerve:
46.6
NFAT5
ENSSSCG00000002755
ENSG00000102908
Nuclear factor of activated T cells 5
Low tissue specificity
Detected in all
NFATC1
ENSSSCG00000004856
ENSG00000131196
Nuclear factor of activated T-cells, cytoplasmic 1
Tissue enhanced
Detected in many
cartilage:
112.0
NFATC2
ENSSSCG00000007477
ENSG00000101096
Nuclear factor of activated T-cells, cytoplasmic 2
Tissue enhanced
Detected in many
cartilage:
117.5
NFATC2IP
ENSSSCG00000007808
ENSG00000176953
NFATC2-interacting protein
Low tissue specificity
Detected in all
NFATC3
ENSSSCG00000029578
ENSG00000072736
Nuclear factor of activated T cells 3
Tissue enhanced
Detected in all
lymphoid tissue:
106.9
NFATC4
ENSSSCG00000001986
ENSG00000100968
Nuclear factor of activated T cells 4
Low tissue specificity
Detected in many
NFE2
ENSSSCG00000000289
ENSG00000123405
Transcription factor NF-E2 45 kDa subunit
Group enriched
Detected in some
bone marrow:
19.3
dura mater:
21.5
NFE2L1
ENSSSCG00000017525
ENSG00000082641
Nuclear factor, erythroid 2 like 1
Low tissue specificity
Detected in all
NFE2L2
ENSSSCG00000015987
ENSG00000116044
Nuclear factor, erythroid 2 like 2
Low tissue specificity
Detected in all
NFE2L3
ENSSSCG00000026894
ENSG00000050344
Nuclear factor, erythroid 2 like 3
Low tissue specificity
Detected in all
NFIA
ENSSSCG00000023243
ENSG00000162599
Nuclear factor I A
Low tissue specificity
Detected in all
NFIB
ENSSSCG00000005190
ENSG00000147862
Nuclear factor I B
Low tissue specificity
Detected in all
NFIC
ENSSSCG00000036537
ENSG00000141905
Nuclear factor I C
Low tissue specificity
Detected in all
NFIL3
ENSSSCG00000009592
ENSG00000165030
Nuclear factor, interleukin 3 regulated
Low tissue specificity
Detected in many
NFIX
ENSSSCG00000013742
ENSG00000008441
Nuclear factor I X
Low tissue specificity
Detected in all
NFKB1
ENSSSCG00000030957
ENSG00000109320
Nuclear factor NF-kappa-B p105 subunit
Low tissue specificity
Detected in all
NFKB2
ENSSSCG00000010580
ENSG00000077150
Nuclear factor kappa B subunit 2
Low tissue specificity
Detected in all
NFKBIA
ENSSSCG00000001952
ENSG00000100906
NF-kappa-B inhibitor alpha
Low tissue specificity
Detected in all
NFKBIB
ENSSSCG00000026904
ENSG00000104825
NFKB inhibitor beta
Tissue enhanced
Detected in all
lens:
62.3
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