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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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18358 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000006376
Tissue enhanced
Detected in many
large intestine:
8.8
lymphoid tissue:
18.7
na
ENSSSCG00000006382
ENSG00000162739
Tissue enhanced
Detected in all
lymphoid tissue:
54.3
stomach:
29.1
na
ENSSSCG00000006388
ENSG00000132716,ENSG00000258465
DDB1- and CUL4-associated factor 8
Low tissue specificity
Detected in all
na
ENSSSCG00000006395
Tissue enhanced
Detected in all
stomach:
177.0
na
ENSSSCG00000006418
Tissue enhanced
Detected in all
lymphoid tissue:
79.0
na
ENSSSCG00000006455
ENSG00000073754
CD5 antigen-like precursor
Group enriched
Detected in all
liver:
95.8
lymphoid tissue:
53.1
na
ENSSSCG00000006486
Tissue enriched
Detected in some
testis:
127.5
na
ENSSSCG00000006490
ENSG00000198952
Low tissue specificity
Detected in all
na
ENSSSCG00000006491
ENSG00000160781
Progestin and adipoQ receptor family member 6
Tissue enhanced
Detected in many
brain:
79.9
vagus nerve:
25.7
na
ENSSSCG00000006510
ENSG00000116580
Low tissue specificity
Detected in all
na
ENSSSCG00000006531
ENSG00000143590,ENSG00000251246
Tissue enhanced
Detected in many
brain:
30.4
skin:
39.7
na
ENSSSCG00000006558
Tissue enriched
Detected in some
testis:
154.9
na
ENSSSCG00000006581
ENSG00000188643
Protein S100-A16
Tissue enhanced
Detected in all
brain:
124.8
mouth:
84.1
na
ENSSSCG00000006628
ENSG00000159352
26S proteasome non-ATPase regulatory subunit 4
Low tissue specificity
Detected in all
na
ENSSSCG00000006636
ENSG00000143458
Low tissue specificity
Detected in all
na
ENSSSCG00000006665
ENSG00000143368
Low tissue specificity
Detected in all
na
ENSSSCG00000006682
ENSG00000121851
Low tissue specificity
Detected in all
na
ENSSSCG00000006685
Gonadotropin-releasing hormone (type 2) receptor 2
Low tissue specificity
Detected in all
na
ENSSSCG00000006694
ENSG00000117262,ENSG00000188092
Low tissue specificity
Detected in all
na
ENSSSCG00000006703
ENSG00000131791
5'-AMP-activated protein kinase subunit beta-2
Tissue enhanced
Detected in all
male glands:
62.5
skeletal muscle:
36.3
na
ENSSSCG00000006704
Low tissue specificity
Detected in many
na
ENSSSCG00000006770
Tissue enhanced
Detected in some
brain:
2.4
large intestine:
1.5
retina:
1.3
testis:
2.2
na
ENSSSCG00000006772
Tissue enhanced
Detected in many
brain:
4.1
heart:
4.6
pineal gland:
4.3
na
ENSSSCG00000006773
ENSG00000184599
Tissue enhanced
Detected in all
brain:
18.9
na
ENSSSCG00000006793
Low tissue specificity
Detected in all
na
ENSSSCG00000006830
Proteasome subunit alpha type-5
Low tissue specificity
Detected in all
na
ENSSSCG00000006842
Tissue enriched
Detected in many
testis:
69.5
na
ENSSSCG00000006851
Tissue enhanced
Detected in all
lymphoid tissue:
43.9
na
ENSSSCG00000006870
ENSG00000156875,ENSG00000283761
Low tissue specificity
Detected in all
na
ENSSSCG00000006881
Group enriched
Detected in some
brain:
10.5
ductus deferens:
5.1
testis:
3.0
na
ENSSSCG00000006919
Tissue enhanced
Detected in all
large intestine:
23.8
lymphoid tissue:
28.1
small intestine:
30.5
stomach:
24.3
na
ENSSSCG00000006963
Tissue enriched
Detected in many
brain:
48.2
na
ENSSSCG00000006985
Tissue enhanced
Detected in many
lens:
14.6
liver:
29.5
na
ENSSSCG00000006996
ENSG00000273748
Low tissue specificity
Detected in all
na
ENSSSCG00000007001
Tissue enriched
Detected in many
testis:
92.8
na
ENSSSCG00000007003
Low tissue specificity
Detected in all
na
ENSSSCG00000007004
Low tissue specificity
Detected in all
na
ENSSSCG00000007031
Tissue enhanced
Detected in all
testis:
64.3
na
ENSSSCG00000007065
Low tissue specificity
Detected in all
na
ENSSSCG00000007085
Destrin
Tissue enhanced
Detected in all
smooth muscle:
163.5
na
ENSSSCG00000007088
ENSG00000089006
Tissue enriched
Detected in all
lens:
209.1
na
ENSSSCG00000007089
ENSG00000125871
Low tissue specificity
Detected in all
na
ENSSSCG00000007098
ENSG00000125821,ENSG00000284776
Low tissue specificity
Detected in all
na
ENSSSCG00000007135
ENSG00000101004
Tissue enhanced
Detected in many
cartilage:
37.1
kidney:
24.5
mesothelial tissue:
34.5
na
ENSSSCG00000007178
Low tissue specificity
Detected in all
na
ENSSSCG00000007188
Peptidyl-prolyl cis-trans isomerase FKBP1A
Low tissue specificity
Detected in all
na
ENSSSCG00000007203
ENSG00000101266
Low tissue specificity
Detected in all
na
ENSSSCG00000007253
ENSG00000101367
Microtubule-associated protein RP/EB family member 1
Low tissue specificity
Detected in all
na
ENSSSCG00000007263
Tissue enriched
Detected in many
upper respiratory system:
59.7
na
ENSSSCG00000007264
ENSG00000101400
Tissue enhanced
Detected in all
heart:
38.4
skeletal muscle:
42.7
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