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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15044 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SNRPN
ENSSSCG00000028124
ENSG00000128739
Small nuclear ribonucleoprotein-associated protein N
Tissue enhanced
Detected in many
brain:
75.1
lens:
52.1
SNTB1
ENSSSCG00000005994
ENSG00000172164
Syntrophin beta 1
Tissue enhanced
Detected in many
choroid plexus:
68.3
lens:
77.2
SNTB2
ENSSSCG00000028109
ENSG00000168807
Syntrophin beta 2
Low tissue specificity
Detected in all
SNU13
ENSSSCG00000000058
NHP2-like protein 1
Tissue enhanced
Detected in all
brain:
79.2
SNUPN
ENSSSCG00000001877
ENSG00000169371
Snurportin 1
Low tissue specificity
Detected in all
SNW1
ENSSSCG00000022932
ENSG00000100603
SNW domain containing 1
Low tissue specificity
Detected in all
SNX10
ENSSSCG00000037598
ENSG00000086300
Sorting nexin 10
Tissue enhanced
Detected in many
brain:
32.5
epididymis:
20.9
pineal gland:
25.2
SNX11
ENSSSCG00000017528
ENSG00000002919
Sorting nexin 11
Low tissue specificity
Detected in all
SNX12
ENSSSCG00000012400
ENSG00000147164
Sorting nexin 12
Low tissue specificity
Detected in all
SNX13
ENSSSCG00000024761
ENSG00000071189
Sorting nexin 13
Low tissue specificity
Detected in all
SNX14
ENSSSCG00000004293
ENSG00000135317
Sorting nexin 14
Low tissue specificity
Detected in all
SNX15
ENSSSCG00000013012
ENSG00000110025
Sorting nexin 15
Low tissue specificity
Detected in all
SNX16
ENSSSCG00000006151
ENSG00000104497
Sorting nexin 16
Low tissue specificity
Detected in all
SNX17
ENSSSCG00000025363
ENSG00000115234
Sorting nexin 17
Low tissue specificity
Detected in all
SNX18
ENSSSCG00000031337
ENSG00000178996
Sorting nexin 18
Low tissue specificity
Detected in all
SNX19
ENSSSCG00000015252
ENSG00000120451
Sorting nexin 19
Low tissue specificity
Detected in all
SNX2
ENSSSCG00000022790
ENSG00000205302
Sorting nexin 2
Low tissue specificity
Detected in all
SNX20
ENSSSCG00000025741
ENSG00000167208
Sorting nexin 20
Tissue enhanced
Detected in many
lymphoid tissue:
14.6
SNX21
ENSSSCG00000007425
ENSG00000124104
Sorting nexin family member 21
Low tissue specificity
Detected in all
SNX22
ENSSSCG00000037275
ENSG00000157734
Sorting nexin 22
Group enriched
Detected in many
brain:
30.6
lens:
8.0
male glands:
24.2
thyroid gland:
25.0
SNX24
ENSSSCG00000039373
ENSG00000064652
Sorting nexin 24
Tissue enhanced
Detected in all
lens:
54.5
SNX25
ENSSSCG00000015789
ENSG00000109762
Sorting nexin 25
Tissue enhanced
Detected in all
thyroid gland:
45.1
SNX27
ENSSSCG00000006619
ENSG00000143376
Sorting nexin family member 27
Low tissue specificity
Detected in all
SNX29
ENSSSCG00000037232
ENSG00000048471
Sorting nexin 29
Low tissue specificity
Detected in all
SNX3
ENSSSCG00000004385
ENSG00000112335
Sorting nexin 3
Low tissue specificity
Detected in all
SNX30
ENSSSCG00000005471
ENSG00000148158
Sorting nexin family member 30
Low tissue specificity
Detected in all
SNX32
ENSSSCG00000012975
ENSG00000172803
Sorting nexin 32
Low tissue specificity
Detected in many
SNX33
ENSSSCG00000001875
ENSG00000173548
Sorting nexin 33
Low tissue specificity
Detected in all
SNX4
ENSSSCG00000036828
ENSG00000114520
Sorting nexin 4
Low tissue specificity
Detected in all
SNX6
ENSSSCG00000040912
ENSG00000129515
Sorting nexin-6
Low tissue specificity
Detected in all
SNX7
ENSSSCG00000006877
ENSG00000162627
Sorting nexin 7
Low tissue specificity
Detected in all
SNX8
ENSSSCG00000040977
ENSG00000106266
Sorting nexin 8
Tissue enhanced
Detected in all
kidney:
51.2
SNX9
ENSSSCG00000030535
ENSG00000130340
Sorting nexin 9
Low tissue specificity
Detected in all
SOAT1
ENSSSCG00000021464
ENSG00000057252
Sterol O-acyltransferase 1
Tissue enhanced
Detected in all
adrenal gland:
73.7
male glands:
49.9
testis:
31.6
SOAT2
ENSSSCG00000000260
ENSG00000167780
Sterol O-acyltransferase 2
Tissue enhanced
Detected in all
liver:
40.9
SOBP
ENSSSCG00000004379
ENSG00000112320
Sine oculis binding protein homolog
Tissue enhanced
Detected in many
cartilage:
62.5
SOCS1
ENSSSCG00000027855
ENSG00000185338
Suppressor of cytokine signaling 1
Tissue enhanced
Detected in many
cartilage:
76.2
stomach:
35.0
SOCS3
ENSSSCG00000036956
ENSG00000184557
Suppressor of cytokine signaling 3
Tissue enhanced
Detected in many
aorta:
47.5
mesothelial tissue:
62.6
ovary:
66.1
SOCS4
ENSSSCG00000032332
ENSG00000180008
Suppressor of cytokine signaling 4
Low tissue specificity
Detected in all
SOCS5
ENSSSCG00000008437
ENSG00000171150
Suppressor of cytokine signaling 5
Low tissue specificity
Detected in all
SOCS7
ENSSSCG00000018057
ENSG00000274211
Suppressor of cytokine signaling 7
Low tissue specificity
Detected in all
SOD1
ENSSSCG00000021355
ENSG00000142168
Superoxide dismutase
Low tissue specificity
Detected in all
SOD2
ENSSSCG00000040317
ENSG00000112096,ENSG00000285441
Superoxide dismutase
Tissue enhanced
Detected in all
heart:
69.9
SOD3
ENSSSCG00000028814
ENSG00000109610
Superoxide dismutase 3
Tissue enhanced
Detected in many
cartilage:
162.0
ovary:
83.5
SOGA1
ENSSSCG00000007324
ENSG00000149639
Suppressor of glucose, autophagy associated 1
Tissue enhanced
Detected in all
brain:
46.3
SON
ENSSSCG00000023674
ENSG00000159140
SON DNA binding protein
Low tissue specificity
Detected in all
SORBS1
ENSSSCG00000010494
ENSG00000095637
Sorbin and SH3 domain containing 1
Tissue enhanced
Detected in all
smooth muscle:
127.1
SORBS2
ENSSSCG00000036679
ENSG00000154556
Sorbin and SH3 domain containing 2
Tissue enhanced
Detected in many
smooth muscle:
100.7
SORBS3
ENSSSCG00000009626
ENSG00000120896
Sorbin and SH3 domain containing 3
Low tissue specificity
Detected in all
SORCS1
ENSSSCG00000030026
ENSG00000108018
Sortilin related VPS10 domain containing receptor 1
Group enriched
Detected in many
ductus deferens:
55.7
vagus nerve:
78.5
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