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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15044 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SIRT3
ENSSSCG00000014558
ENSG00000142082
NAD-dependent protein deacetylase sirtuin-3, mitochondrial precursor
Low tissue specificity
Detected in all
SIRT4
ENSSSCG00000009901
ENSG00000089163
NAD-dependent protein lipoamidase sirtuin-4, mitochondrial
Low tissue specificity
Detected in all
SIRT5
ENSSSCG00000031129
ENSG00000124523
NAD-dependent protein deacylase sirtuin-5, mitochondrial
Low tissue specificity
Detected in all
SIRT6
ENSSSCG00000013496
ENSG00000077463
NAD-dependent protein deacetylase sirtuin-6
Low tissue specificity
Detected in all
SIRT7
ENSSSCG00000034695
ENSG00000187531
NAD-dependent protein deacetylase sirtuin-7
Tissue enhanced
Detected in all
stomach:
45.2
SIT1
ENSSSCG00000005312
ENSG00000137078
Signaling threshold regulating transmembrane adaptor 1
Tissue enriched
Detected in some
lymphoid tissue:
64.0
SIX1
ENSSSCG00000005087
ENSG00000126778
Homeobox protein SIX1
Tissue enhanced
Detected in many
pituitary gland:
39.5
salivary gland:
31.6
skeletal muscle:
47.3
SIX2
ENSSSCG00000008446
ENSG00000170577
SIX homeobox 2
Tissue enhanced
Detected in many
dura mater:
40.6
salivary gland:
30.5
upper respiratory system:
27.2
SIX4
ENSSSCG00000005089
ENSG00000100625
Homeobox protein SIX4
Tissue enhanced
Detected in many
male glands:
28.3
salivary gland:
30.7
skeletal muscle:
26.9
upper respiratory system:
22.6
SIX5
ENSSSCG00000035791
ENSG00000177045
SIX homeobox 5
Low tissue specificity
Detected in many
SKA2
ENSSSCG00000034217
ENSG00000182628
Spindle and kinetochore associated complex subunit 2
Low tissue specificity
Detected in all
SKA3
ENSSSCG00000028249
ENSG00000165480
Spindle and kinetochore associated complex subunit 3
Low tissue specificity
Detected in all
SKAP1
ENSSSCG00000017527
ENSG00000141293
Src kinase associated phosphoprotein 1
Tissue enhanced
Detected in many
large intestine:
19.5
lymphoid tissue:
41.3
SKAP2
ENSSSCG00000016708
ENSG00000005020
Src kinase associated phosphoprotein 2
Low tissue specificity
Detected in many
SKI
ENSSSCG00000040944
ENSG00000157933
SKI proto-oncogene
Low tissue specificity
Detected in all
SKIDA1
ENSSSCG00000011087
ENSG00000180592
SKI/DACH domain containing 1
Tissue enhanced
Detected in all
skeletal muscle:
28.1
SKIL
ENSSSCG00000011746
ENSG00000136603
SKI like proto-oncogene
Low tissue specificity
Detected in all
SKP2
ENSSSCG00000016835
ENSG00000145604
S-phase kinase-associated protein 2
Tissue enhanced
Detected in all
heart:
40.4
SLA
ENSSSCG00000005949
ENSG00000155926
Src like adaptor
Group enriched
Detected in all
lymphoid tissue:
39.2
thyroid gland:
112.2
SLA-5
ENSSSCG00000030767
MHC class I antigen 5 precursor
Low tissue specificity
Detected in many
SLA-DMA
ENSSSCG00000001470
ENSG00000204257
SLA-DM alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
51.5
SLA-DMB
ENSSSCG00000001469
ENSG00000242574
MHC class II, DM beta precursor
Low tissue specificity
Detected in many
SLA-DOA
ENSSSCG00000001472
ENSG00000204252
SLA class II histocompatibility antigen, DO alpha chain precursor
Low tissue specificity
Detected in all
SLA-DQB1
ENSSSCG00000001457
ENSG00000179344,ENSG00000232629
SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
129.0
SLA2
ENSSSCG00000033020
ENSG00000101082
Src like adaptor 2
Tissue enhanced
Detected in all
lymphoid tissue:
35.6
stomach:
21.1
SLAIN2
ENSSSCG00000008821
ENSG00000109171
SLAIN motif family member 2
Low tissue specificity
Detected in all
SLAMF1
ENSSSCG00000006380
ENSG00000117090
Signaling lymphocytic activation molecule precursor
Tissue enriched
Detected in all
lymphoid tissue:
49.1
SLAMF7
ENSSSCG00000006378
ENSG00000026751
SLAM family member 7
Tissue enhanced
Detected in all
lymphoid tissue:
45.9
SLAMF8
ENSSSCG00000006398
ENSG00000158714
SLAM family member 8
Low tissue specificity
Detected in all
SLAMF9
ENSSSCG00000006400
ENSG00000162723
SLAM family member 9
Low tissue specificity
Detected in all
SLBP
ENSSSCG00000008676
ENSG00000163950
Histone RNA hairpin-binding protein
Low tissue specificity
Detected in all
SLC10A3
ENSSSCG00000025766
ENSG00000126903
Solute carrier family 10 member 3
Low tissue specificity
Detected in all
SLC10A5
ENSSSCG00000033693
ENSG00000253598
Solute carrier family 10 member 5
Tissue enriched
Detected in many
liver:
26.7
SLC10A6
ENSSSCG00000028952
ENSG00000145283
Solute carrier family 10 member 6
Tissue enhanced
Detected in many
mouth:
27.1
skin:
30.3
SLC10A7
ENSSSCG00000009035
ENSG00000120519
Sodium/bile acid cotransporter 7
Low tissue specificity
Detected in all
SLC11A1
ENSSSCG00000039798
ENSG00000018280
Natural resistance-associated macrophage protein 1
Tissue enriched
Detected in some
lymphoid tissue:
65.1
SLC11A2
ENSSSCG00000034039
ENSG00000110911
Natural resistance-associated macrophage protein 2
Tissue enhanced
Detected in all
upper respiratory system:
51.1
SLC12A2
ENSSSCG00000014255
ENSG00000064651
Solute carrier family 12 member 2
Tissue enriched
Detected in many
male glands:
217.5
SLC12A4
ENSSSCG00000028609
ENSG00000124067
Solute carrier family 12 member 4
Tissue enhanced
Detected in all
choroid plexus:
54.7
SLC12A6
ENSSSCG00000002243
ENSG00000140199
Solute carrier family 12 member 6
Low tissue specificity
Detected in all
SLC12A7
ENSSSCG00000034302
ENSG00000113504
Solute carrier family 12 member 7
Tissue enhanced
Detected in many
heart:
47.8
SLC12A9
ENSSSCG00000023619
ENSG00000146828
Solute carrier family 12 member 9
Low tissue specificity
Detected in all
SLC13A1
ENSSSCG00000016609
ENSG00000081800
Solute carrier family 13 member 1
Low tissue specificity
Detected in all
SLC13A5
ENSSSCG00000017888
ENSG00000141485
Solute carrier family 13 member 5
Tissue enhanced
Detected in many
endometrium:
33.3
liver:
24.3
SLC14A1
ENSSSCG00000004492
ENSG00000141469
Solute carrier family 14 member 1 (Kidd blood group)
Tissue enhanced
Detected in all
brain:
34.6
kidney:
39.0
SLC15A1
ENSSSCG00000009513
ENSG00000088386
Solute carrier family 15 member 1
Tissue enhanced
Detected in all
small intestine:
47.0
SLC15A2
ENSSSCG00000030305
ENSG00000163406
Solute carrier family 15 member 2
Tissue enhanced
Detected in many
lymphoid tissue:
37.7
SLC15A3
ENSSSCG00000013114
ENSG00000110446
Solute carrier family 15 member 3
Tissue enhanced
Detected in many
lymphoid tissue:
33.7
synovial tissue:
44.0
SLC15A4
ENSSSCG00000025820
ENSG00000139370
Solute carrier family 15 member 4
Low tissue specificity
Detected in all
SLC16A1
ENSSSCG00000006771
ENSG00000155380
Monocarboxylate transporter 1
Tissue enhanced
Detected in many
large intestine:
76.4
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