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Human disease related genes
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UMAP gene cluster
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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15044 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
QKI
ENSSSCG00000004029
ENSG00000112531
Protein quaking
Tissue enhanced
Detected in all
brain:
149.4
vagus nerve:
96.4
QPCT
ENSSSCG00000008491
ENSG00000115828
Glutaminyl-peptide cyclotransferase
Tissue enhanced
Detected in many
adrenal gland:
70.4
pituitary gland:
28.7
QPCTL
ENSSSCG00000032819
ENSG00000011478
Glutaminyl-peptide cyclotransferase-like protein
Low tissue specificity
Detected in all
QRFP
ENSSSCG00000005705
ENSG00000188710
Pyroglutamylated RFamide peptide
Tissue enhanced
Detected in all
cervix:
37.5
QRICH1
ENSSSCG00000011373
ENSG00000198218
Glutamine rich 1
Low tissue specificity
Detected in all
QRSL1
ENSSSCG00000004374
ENSG00000130348
Glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
Low tissue specificity
Detected in all
QSER1
ENSSSCG00000013314
ENSG00000060749
Glutamine and serine rich 1
Low tissue specificity
Detected in all
QSOX1
ENSSSCG00000015535
ENSG00000116260
Quiescin sulfhydryl oxidase 1
Tissue enhanced
Detected in all
liver:
66.8
male glands:
91.5
stomach:
77.5
QSOX2
ENSSSCG00000040163
ENSG00000165661
Quiescin sulfhydryl oxidase 2
Low tissue specificity
Detected in all
QTRT1
ENSSSCG00000013637
ENSG00000213339
Queuine tRNA-ribosyltransferase catalytic subunit 1
Low tissue specificity
Detected in all
QTRT2
ENSSSCG00000011912
ENSG00000151576
Queuine tRNA-ribosyltransferase accessory subunit 2
Low tissue specificity
Detected in all
R3HCC1L
ENSSSCG00000010531
ENSG00000166024
R3H domain and coiled-coil containing 1 like
Low tissue specificity
Detected in all
R3HDM1
ENSSSCG00000015692
ENSG00000048991
R3H domain containing 1
Tissue enhanced
Detected in all
brain:
58.4
R3HDM4
ENSSSCG00000013419
ENSG00000198858
R3H domain containing 4
Low tissue specificity
Detected in all
RAB10
ENSSSCG00000008573
ENSG00000084733
Ras-related protein Rab-10
Low tissue specificity
Detected in all
RAB11A
ENSSSCG00000032312
ENSG00000103769
Ras-related protein Rab-11A
Low tissue specificity
Detected in all
RAB11B
ENSSSCG00000013600
ENSG00000185236
Ras-related protein Rab-11B
Low tissue specificity
Detected in all
RAB11FIP2
ENSSSCG00000010672
ENSG00000107560
RAB11 family interacting protein 2
Low tissue specificity
Detected in all
RAB11FIP3
ENSSSCG00000035854
ENSG00000090565
RAB11 family interacting protein 3
Tissue enhanced
Detected in all
kidney:
45.8
RAB11FIP4
ENSSSCG00000017747
ENSG00000131242
RAB11 family interacting protein 4
Tissue enhanced
Detected in many
brain:
48.7
RAB11FIP5
ENSSSCG00000022162
ENSG00000135631
RAB11 family interacting protein 5
Tissue enhanced
Detected in all
kidney:
42.9
testis:
41.1
RAB12
ENSSSCG00000038026
ENSG00000206418
RAB12, member RAS oncogene family
Low tissue specificity
Detected in all
RAB13
ENSSSCG00000006564
ENSG00000143545
RAB13, member RAS oncogene family
Low tissue specificity
Detected in all
RAB14
ENSSSCG00000005514
ENSG00000119396
Ras-related protein Rab-14
Low tissue specificity
Detected in all
RAB18
ENSSSCG00000028655
ENSG00000099246
RAB18, member RAS oncogene family
Low tissue specificity
Detected in all
RAB19
ENSSSCG00000038693
ENSG00000146955
RAB19, member RAS oncogene family
Tissue enhanced
Detected in all
lymphoid tissue:
40.5
RAB1A
ENSSSCG00000008359
ENSG00000138069
Ras-related protein Rab-1A
Low tissue specificity
Detected in all
RAB1B
ENSSSCG00000012954
ENSG00000174903
Ras-related protein Rab-1B
Tissue enhanced
Detected in all
brain:
108.6
RAB20
ENSSSCG00000022719
ENSG00000139832
RAB20, member RAS oncogene family
Tissue enhanced
Detected in many
heart:
26.5
RAB21
ENSSSCG00000032468
ENSG00000080371
RAB21, member RAS oncogene family
Low tissue specificity
Detected in all
RAB22A
ENSSSCG00000007513
ENSG00000124209
Ras-related protein Rab-22A
Low tissue specificity
Detected in all
RAB23
ENSSSCG00000029539
ENSG00000112210
RAB23, member RAS oncogene family
Tissue enhanced
Detected in all
smooth muscle:
49.7
RAB24
ENSSSCG00000014043
ENSG00000169228
Ras-related protein Rab-24
Low tissue specificity
Detected in all
RAB25
ENSSSCG00000039186
ENSG00000132698
RAB25, member RAS oncogene family
Low tissue specificity
Detected in all
RAB26
ENSSSCG00000033691
ENSG00000167964
RAB26, member RAS oncogene family
Low tissue specificity
Detected in all
RAB27A
ENSSSCG00000004612
ENSG00000069974
Ras-related protein Rab-27A
Tissue enhanced
Detected in all
pituitary gland:
55.5
RAB27B
ENSSSCG00000035243
ENSG00000041353
RAB27B, member RAS oncogene family
Tissue enhanced
Detected in many
male glands:
114.3
salivary gland:
34.9
RAB29
ENSSSCG00000026269
ENSG00000117280
RAB29, member RAS oncogene family
Tissue enhanced
Detected in all
male glands:
35.6
RAB2A
ENSSSCG00000006232
ENSG00000104388
RAB2A, member RAS oncogene family
Low tissue specificity
Detected in all
RAB2B
ENSSSCG00000029544
ENSG00000129472
RAB2B, member RAS oncogene family
Low tissue specificity
Detected in all
RAB30
ENSSSCG00000014900
ENSG00000137502
RAB30, member RAS oncogene family
Low tissue specificity
Detected in all
RAB31
ENSSSCG00000037264
ENSG00000168461
RAB31, member RAS oncogene family
Low tissue specificity
Detected in many
RAB32
ENSSSCG00000004114
ENSG00000118492
Ras-related protein Rab-32
Low tissue specificity
Detected in all
RAB33A
ENSSSCG00000012658
ENSG00000134594
Ras-related protein Rab-33A
Tissue enhanced
Detected in all
brain:
18.0
RAB33B
ENSSSCG00000020711
ENSG00000172007
RAB33B, member RAS oncogene family
Low tissue specificity
Detected in all
RAB34
ENSSSCG00000017769
ENSG00000109113
Ras-related protein Rab-34
Low tissue specificity
Detected in all
RAB35
ENSSSCG00000033876
ENSG00000111737
Ras-related protein Rab-35
Low tissue specificity
Detected in all
RAB36
ENSSSCG00000010048
ENSG00000100228
RAB36, member RAS oncogene family
Low tissue specificity
Detected in many
RAB37
ENSSSCG00000017233
ENSG00000172794
RAB37, member RAS oncogene family
Tissue enhanced
Detected in many
lymphoid tissue:
47.2
stomach:
16.1
RAB38
ENSSSCG00000033878
ENSG00000123892
RAB38, member RAS oncogene family
Tissue enhanced
Detected in all
pineal gland:
32.1
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