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Human disease related genes
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UMAP gene cluster
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Subclass
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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15044 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NUP43
ENSSSCG00000004105
ENSG00000120253
Nucleoporin 43
Low tissue specificity
Detected in all
NUP50
ENSSSCG00000000019
ENSG00000093000
Nucleoporin 50
Tissue enhanced
Detected in all
testis:
64.9
NUP58
ENSSSCG00000035318
ENSG00000139496
Nucleoporin 58
Low tissue specificity
Detected in all
NUP62
ENSSSCG00000040333
ENSG00000213024
Nucleoporin 62
Low tissue specificity
Detected in all
NUP85
ENSSSCG00000017207
ENSG00000125450
Nucleoporin 85
Low tissue specificity
Detected in all
NUP88
ENSSSCG00000033706
ENSG00000108559
Nucleoporin 88
Low tissue specificity
Detected in all
NUP93
ENSSSCG00000025830
ENSG00000102900
Nuclear pore complex protein Nup93
Low tissue specificity
Detected in all
NUP98
ENSSSCG00000014794
ENSG00000110713
Nucleoporin 98
Low tissue specificity
Detected in all
NUPL2
ENSSSCG00000023793
ENSG00000136243
Nucleoporin like 2
Low tissue specificity
Detected in all
NUPR1
ENSSSCG00000040162
ENSG00000176046
Nuclear protein 1, transcriptional regulator
Tissue enhanced
Detected in many
kidney:
107.6
liver:
104.2
salivary gland:
176.4
NUS1
ENSSSCG00000020885
ENSG00000153989
NUS1 dehydrodolichyl diphosphate synthase subunit
Low tissue specificity
Detected in all
NUSAP1
ENSSSCG00000035544
ENSG00000137804
Nucleolar and spindle associated protein 1
Low tissue specificity
Detected in all
NVL
ENSSSCG00000026705
ENSG00000143748
Nuclear VCP-like
Low tissue specificity
Detected in all
NXF1
ENSSSCG00000022866
ENSG00000162231
Nuclear RNA export factor 1
Low tissue specificity
Detected in all
NXN
ENSSSCG00000028720
ENSG00000167693
Nucleoredoxin
Tissue enhanced
Detected in all
lens:
89.9
NXNL1
ENSSSCG00000040328
ENSG00000171773
Nucleoredoxin like 1
Low tissue specificity
Detected in all
NXPE3
ENSSSCG00000011950
ENSG00000144815
Neurexophilin and PC-esterase domain family member 3
Low tissue specificity
Detected in all
NXPE4
ENSSSCG00000026203
ENSG00000137634
Neurexophilin and PC-esterase domain family member 4
Tissue enhanced
Detected in many
breast:
18.9
large intestine:
41.3
liver:
19.0
NXT1
ENSSSCG00000007119
ENSG00000132661
Nuclear transport factor 2 like export factor 1
Low tissue specificity
Detected in all
NXT2
ENSSSCG00000012581
ENSG00000101888
Nuclear transport factor 2 like export factor 2
Low tissue specificity
Detected in all
NYAP1
ENSSSCG00000030337
ENSG00000166924
Neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1
Low tissue specificity
Detected in many
NYNRIN
ENSSSCG00000032473
ENSG00000205978
NYN domain and retroviral integrase containing
Low tissue specificity
Detected in all
NYX
ENSSSCG00000021460
ENSG00000188937
Nyctalopin
Tissue enhanced
Detected in many
lens:
7.8
penis:
11.3
skin:
7.3
OAF
ENSSSCG00000036307
ENSG00000184232
Out at first homolog
Tissue enhanced
Detected in all
liver:
92.1
OARD1
ENSSSCG00000023366
ENSG00000124596
O-acyl-ADP-ribose deacylase 1
Low tissue specificity
Detected in all
OAS2
ENSSSCG00000009881
ENSG00000111335
2'-5'-oligoadenylate synthase 2
Tissue enhanced
Detected in all
small intestine:
70.3
OAZ1
ENSSSCG00000013460
ENSG00000104904
Sus scrofa ornithine decarboxylase antizyme 1 (OAZ1), transcript variant 1, mRNA.
Low tissue specificity
Detected in all
OAZ2
ENSSSCG00000004550
ENSG00000180304
Ornithine decarboxylase antizyme 2 isoform 1
Low tissue specificity
Detected in all
OBSL1
ENSSSCG00000028052
ENSG00000124006
Obscurin like 1
Low tissue specificity
Detected in all
OCIAD1
ENSSSCG00000008828
ENSG00000109180
OCIA domain containing 1
Low tissue specificity
Detected in all
OCIAD2
ENSSSCG00000008829
ENSG00000145247
OCIA domain containing 2
Tissue enhanced
Detected in all
liver:
55.0
OCLN
ENSSSCG00000021514
ENSG00000197822
Occludin
Tissue enhanced
Detected in all
choroid plexus:
56.9
OCRL
ENSSSCG00000012650
ENSG00000122126
OCRL, inositol polyphosphate-5-phosphatase
Tissue enriched
Detected in all
ovary:
87.6
OCSTAMP
ENSSSCG00000007448
ENSG00000149635
Osteoclast stimulatory transmembrane protein
Low tissue specificity
Detected in all
ODC1
ENSSSCG00000027121
ENSG00000115758
Ornithine decarboxylase
Tissue enhanced
Detected in all
endometrium:
92.9
ovary:
68.3
ODF2
ENSSSCG00000005651
ENSG00000136811
Outer dense fiber protein 2
Tissue enriched
Detected in all
testis:
133.6
ODF2L
ENSSSCG00000006936
ENSG00000122417
Outer dense fiber of sperm tails 2 like
Low tissue specificity
Detected in all
ODF3B
ENSSSCG00000000967
ENSG00000177989
Outer dense fiber protein 3B
Tissue enhanced
Detected in many
choroid plexus:
31.2
fallopian tube:
58.8
lung:
27.2
upper respiratory system:
52.3
ODR4
ENSSSCG00000015577
ENSG00000157181
Odr-4 GPCR localization factor homolog
Low tissue specificity
Detected in all
OGDH
ENSSSCG00000016743
ENSG00000105953
Oxoglutarate dehydrogenase
Low tissue specificity
Detected in all
OGFOD1
ENSSSCG00000025953
ENSG00000087263
Prolyl 3-hydroxylase OGFOD1
Low tissue specificity
Detected in all
OGFOD2
ENSSSCG00000009783
ENSG00000111325
2-oxoglutarate and iron dependent oxygenase domain containing 2
Low tissue specificity
Detected in all
OGFOD3
ENSSSCG00000032116
ENSG00000181396
2-oxoglutarate and iron dependent oxygenase domain containing 3
Low tissue specificity
Detected in all
OGFR
ENSSSCG00000034216
ENSG00000060491
Opioid growth factor receptor
Low tissue specificity
Detected in all
OGFRL1
ENSSSCG00000004279
ENSG00000119900
Opioid growth factor receptor like 1
Low tissue specificity
Detected in all
OGG1
ENSSSCG00000011549
ENSG00000114026
8-oxoguanine DNA glycosylase
Low tissue specificity
Detected in all
OGN
ENSSSCG00000034607
ENSG00000106809
Mimecan precursor
Tissue enhanced
Detected in all
choroid plexus:
87.6
OGT
ENSSSCG00000012403
ENSG00000147162
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
Low tissue specificity
Detected in all
OIP5
ENSSSCG00000004750
ENSG00000104147
Opa interacting protein 5
Low tissue specificity
Detected in all
OLA1
ENSSSCG00000015963
ENSG00000138430
Obg like ATPase 1
Tissue enhanced
Detected in all
lens:
75.6
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