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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15957 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TNFRSF1A
ENSSSCG00000000708
ENSG00000067182
Tumor necrosis factor receptor superfamily member 1A precursor
Low tissue specificity
Detected in all
TNFRSF1B
ENSSSCG00000022208
ENSG00000028137
Tumor necrosis factor receptor superfamily member 1B precursor
Tissue enhanced
Detected in many
synovial tissue:
60.5
TNFRSF21
ENSSSCG00000001727
ENSG00000146072
TNF receptor superfamily member 21
Tissue enhanced
Detected in many
male glands:
130.1
stomach:
54.8
TNFRSF25
ENSSSCG00000040001
ENSG00000215788
TNF receptor superfamily member 25
Tissue enhanced
Detected in many
lymphoid tissue:
17.8
stomach:
15.8
TNFRSF6B
ENSSSCG00000038671
ENSG00000243509
TNF receptor superfamily member 6b
Tissue enhanced
Detected in many
adrenal gland:
45.6
mesothelial tissue:
11.9
TNFRSF9
ENSSSCG00000003386
ENSG00000049249
Tumor necrosis factor receptor superfamily member 9
Tissue enhanced
Detected in all
lymphoid tissue:
35.3
TNFSF10
ENSSSCG00000020906
ENSG00000121858
Tumor necrosis factor ligand superfamily member 10
Tissue enhanced
Detected in all
liver:
91.0
TNFSF11
ENSSSCG00000009429
ENSG00000120659
TNF superfamily member 11
Low tissue specificity
Detected in all
TNFSF12
ENSSSCG00000040188
ENSG00000239697
Tumor necrosis factor ligand superfamily member 12
Low tissue specificity
Detected in all
TNFSF13
ENSSSCG00000036521
ENSG00000161955
Tumor necrosis factor ligand superfamily member 13
Tissue enhanced
Detected in many
choroid plexus:
27.5
upper respiratory system:
35.5
TNFSF13B
ENSSSCG00000009542
ENSG00000102524
Tumor necrosis factor ligand superfamily member 13B
Tissue enhanced
Detected in many
lymphoid tissue:
16.1
small intestine:
37.3
stomach:
17.4
TNFSF14
ENSSSCG00000026695
ENSG00000125735
Tumor necrosis factor ligand superfamily member 14
Tissue enhanced
Detected in many
stomach:
22.8
TNFSF15
ENSSSCG00000034087
ENSG00000181634
Tumor necrosis factor ligand superfamily member 15
Tissue enhanced
Detected in many
adipose tissue:
17.3
TNFSF8
ENSSSCG00000036457
ENSG00000106952
Tumor necrosis factor ligand superfamily member 8
Tissue enhanced
Detected in many
lymphoid tissue:
14.9
TNFSF9
ENSSSCG00000022370
ENSG00000125657
TNF superfamily member 9
Low tissue specificity
Detected in all
TNIK
ENSSSCG00000028905
ENSG00000154310
TRAF2 and NCK interacting kinase
Low tissue specificity
Detected in all
TNIP1
ENSSSCG00000017091
ENSG00000145901
TNFAIP3-interacting protein 1
Low tissue specificity
Detected in all
TNIP2
ENSSSCG00000008691
ENSG00000168884
TNFAIP3 interacting protein 2
Low tissue specificity
Detected in all
TNIP3
ENSSSCG00000009100
ENSG00000050730
TNFAIP3 interacting protein 3
Tissue enhanced
Detected in many
lymphoid tissue:
13.4
testis:
23.3
upper respiratory system:
23.4
TNK1
ENSSSCG00000026142
ENSG00000174292
Tyrosine kinase non receptor 1
Tissue enhanced
Detected in many
stomach:
30.7
TNK2
ENSSSCG00000011849
ENSG00000061938
Tyrosine kinase non receptor 2
Low tissue specificity
Detected in all
TNKS
ENSSSCG00000015851
ENSG00000173273
Tankyrase
Low tissue specificity
Detected in all
TNKS1BP1
ENSSSCG00000028527
ENSG00000149115
Tankyrase 1 binding protein 1
Low tissue specificity
Detected in all
TNKS2
ENSSSCG00000010465
ENSG00000107854
Tankyrase 2
Low tissue specificity
Detected in all
TNN
ENSSSCG00000015507
ENSG00000120332
Tenascin N
Tissue enhanced
Detected in all
dura mater:
55.0
TNNC1
ENSSSCG00000011441
ENSG00000114854
Troponin C, slow skeletal and cardiac muscles
Group enriched
Detected in some
heart:
332.4
skeletal muscle:
388.6
TNNI3
ENSSSCG00000024505
ENSG00000129991
Troponin I, cardiac muscle
Tissue enriched
Detected in some
heart:
453.3
TNNT2
ENSSSCG00000023031
ENSG00000118194
Troponin T, cardiac muscle isoform 6
Tissue enriched
Detected in some
heart:
578.7
TNPO1
ENSSSCG00000027293
ENSG00000083312
Transportin 1
Low tissue specificity
Detected in all
TNPO2
ENSSSCG00000013726
ENSG00000105576
Transportin 2
Low tissue specificity
Detected in all
TNPO3
ENSSSCG00000016572
ENSG00000064419
Transportin 3
Low tissue specificity
Detected in all
TNRC18
ENSSSCG00000022553
ENSG00000182095
Trinucleotide repeat containing 18
Low tissue specificity
Detected in all
TNRC6A
ENSSSCG00000038870
ENSG00000090905
Trinucleotide repeat containing 6A
Low tissue specificity
Detected in all
TNRC6B
ENSSSCG00000000078
ENSG00000100354
Trinucleotide repeat containing 6B
Low tissue specificity
Detected in all
TNRC6C
ENSSSCG00000034373
ENSG00000078687
Trinucleotide repeat containing 6C
Low tissue specificity
Detected in all
TNS2
ENSSSCG00000000263
ENSG00000111077
Tensin 2
Low tissue specificity
Detected in all
TOB1
ENSSSCG00000040773
ENSG00000141232
Protein Tob1
Tissue enhanced
Detected in all
skeletal muscle:
128.5
TOB2
ENSSSCG00000037958
ENSG00000183864
Transducer of ERBB2, 2
Low tissue specificity
Detected in all
TOE1
ENSSSCG00000003918
ENSG00000132773
Target of EGR1, exonuclease
Low tissue specificity
Detected in all
TOGARAM1
ENSSSCG00000027765
ENSG00000198718
TOG array regulator of axonemal microtubules 1
Low tissue specificity
Detected in all
TOLLIP
ENSSSCG00000033033
ENSG00000078902
Toll-interacting protein
Low tissue specificity
Detected in all
TOM1
ENSSSCG00000038943
ENSG00000100284
Target of myb1 membrane trafficking protein
Low tissue specificity
Detected in all
TOM1L1
ENSSSCG00000017601
ENSG00000141198
Target of myb1 like 1 membrane trafficking protein
Tissue enhanced
Detected in many
male glands:
48.1
TOM1L2
ENSSSCG00000038639
ENSG00000175662
Target of myb1 like 2 membrane trafficking protein
Low tissue specificity
Detected in all
TOMM20
ENSSSCG00000010158
ENSG00000173726
Translocase of outer mitochondrial membrane 20
Low tissue specificity
Detected in all
TOMM34
ENSSSCG00000007383
ENSG00000025772
Mitochondrial import receptor subunit TOM34
Tissue enhanced
Detected in all
lens:
31.9
testis:
33.1
TOMM40
ENSSSCG00000003089
ENSG00000130204
Mitochondrial import receptor subunit TOM40 homolog
Low tissue specificity
Detected in all
TOMM40L
ENSSSCG00000006354
ENSG00000158882
Translocase of outer mitochondrial membrane 40 like
Low tissue specificity
Detected in all
TOMM7
ENSSSCG00000015384
ENSG00000196683
Mitochondrial import receptor subunit TOM7 homolog
Low tissue specificity
Detected in all
TOMM70
ENSSSCG00000011963
ENSG00000154174
Translocase of outer mitochondrial membrane 70
Tissue enhanced
Detected in all
brain:
62.1
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