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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Term
Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15957 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000038552
Tissue enriched
Detected in many
testis:
30.6
na
ENSSSCG00000038555
Tissue enhanced
Detected in some
smooth muscle:
6.9
stomach:
9.6
urinary bladder:
5.6
na
ENSSSCG00000038575
Tissue enhanced
Detected in many
brain:
9.9
na
ENSSSCG00000038581
ENSG00000176731
Low tissue specificity
Detected in all
na
ENSSSCG00000038588
Tissue enhanced
Detected in some
brain:
5.6
kidney:
8.5
na
ENSSSCG00000038603
ENSG00000256537
Low tissue specificity
Detected in many
na
ENSSSCG00000038605
Low tissue specificity
Detected in all
na
ENSSSCG00000038608
Low tissue specificity
Detected in all
na
ENSSSCG00000038616
Low tissue specificity
Detected in all
na
ENSSSCG00000038620
Tissue enhanced
Detected in some
adipose tissue:
1.4
brain:
4.5
testis:
1.1
na
ENSSSCG00000038621
Low tissue specificity
Detected in all
na
ENSSSCG00000038622
Tissue enriched
Detected in many
cartilage:
89.9
na
ENSSSCG00000038628
Low tissue specificity
Detected in all
na
ENSSSCG00000038633
ENSG00000166275
BLOC-1-related complex subunit 7
Low tissue specificity
Detected in all
na
ENSSSCG00000038638
Low tissue specificity
Detected in all
na
ENSSSCG00000038646
Low tissue specificity
Detected in all
na
ENSSSCG00000038647
Low tissue specificity
Detected in all
na
ENSSSCG00000038655
Tissue enhanced
Detected in many
mouth:
6.9
na
ENSSSCG00000038657
ENSG00000123472
Low tissue specificity
Detected in all
na
ENSSSCG00000038665
Tissue enhanced
Detected in many
thyroid gland:
44.0
na
ENSSSCG00000038673
Tissue enhanced
Detected in many
testis:
13.4
na
ENSSSCG00000038676
Tissue enhanced
Detected in single
adipose tissue:
1.5
na
ENSSSCG00000038679
ENSG00000119397
Low tissue specificity
Detected in all
na
ENSSSCG00000038697
Low tissue specificity
Detected in all
na
ENSSSCG00000038702
Low tissue specificity
Detected in many
na
ENSSSCG00000038708
ENSG00000136371,ENSG00000259332
Low tissue specificity
Detected in all
na
ENSSSCG00000038715
ENSG00000154803
Low tissue specificity
Detected in all
na
ENSSSCG00000038719
Tissue enhanced
Detected in some
large intestine:
47.4
lung:
54.4
small intestine:
43.0
upper respiratory system:
164.7
na
ENSSSCG00000038728
Tissue enhanced
Detected in some
adipose tissue:
5.5
lens:
5.9
lung:
6.8
lymphoid tissue:
10.2
na
ENSSSCG00000038743
Tissue enhanced
Detected in many
liver:
18.2
na
ENSSSCG00000038749
Low tissue specificity
Detected in many
na
ENSSSCG00000038750
Tissue enhanced
Detected in many
cartilage:
10.4
testis:
22.1
na
ENSSSCG00000038754
ENSG00000234545
Low tissue specificity
Detected in all
na
ENSSSCG00000038756
Low tissue specificity
Detected in many
na
ENSSSCG00000038757
ENSG00000228439
Low tissue specificity
Detected in all
na
ENSSSCG00000038778
Tissue enhanced
Detected in all
retina:
199.7
na
ENSSSCG00000038786
ENSG00000197361
Tissue enhanced
Detected in many
smooth muscle:
34.9
na
ENSSSCG00000038803
Low tissue specificity
Detected in many
na
ENSSSCG00000038811
ENSG00000120162
Tissue enhanced
Detected in many
brain:
54.4
lens:
51.1
na
ENSSSCG00000038813
Tissue enhanced
Detected in some
heart:
3.0
kidney:
1.6
male glands:
2.7
na
ENSSSCG00000038823
Low tissue specificity
Detected in many
na
ENSSSCG00000038825
Cationic amino acid transporter 3-like
Tissue enhanced
Detected in all
lymphoid tissue:
93.4
na
ENSSSCG00000038827
Tissue enhanced
Detected in many
skin:
13.7
na
ENSSSCG00000038829
ENSG00000170846
Tissue enhanced
Detected in all
cartilage:
45.7
na
ENSSSCG00000038837
Low tissue specificity
Detected in all
na
ENSSSCG00000038841
ENSG00000227124
Low tissue specificity
Detected in all
na
ENSSSCG00000038845
Low tissue specificity
Detected in all
na
ENSSSCG00000038852
ENSG00000169951,ENSG00000169955
Low tissue specificity
Detected in all
na
ENSSSCG00000038859
ENSG00000153391
Low tissue specificity
Detected in all
na
ENSSSCG00000038863
Group enriched
Detected in some
male glands:
22.7
pineal gland:
22.3
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